View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_low_18 (Length: 422)
Name: NF0802_low_18
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 94 - 414
Target Start/End: Original strand, 38729581 - 38729897
Alignment:
| Q |
94 |
tcaagtagaactttggcagcaacatccacaagcttcttattagccagtagagataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattag |
193 |
Q |
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| T |
38729581 |
tcaagtagaactttggcagcaacatccaccagcttcttattagcaagtagagataaaagaacagtataagtgctcaggcctggccttaaacctgcattag |
38729680 |
T |
|
| Q |
194 |
tcattgaattgtacagtttgatggcatgatcaatttgtccagacgcagcatgcatttccaagagacaagcatacgtagatggagttggtagaaatccagc |
293 |
Q |
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||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38729681 |
tcattgaattgtacagtttcatagcatgatcgatttgtccagacgcagcatgcatttccaagagacaagcatatgtagatggagttggtagaaatccagc |
38729780 |
T |
|
| Q |
294 |
tttctccatatatatctgaaaatgcagacatatcaatatcaagcttccctgattttgcatgtgactcaatgatcaatgtaaacaagccaaagtttggtct |
393 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38729781 |
tttctcc----atatctgaaaatgcagacatagcaatatcaagcttccctgattttgcatgtgactcaatgatcaatgtatacaagccaaagtttggtct |
38729876 |
T |
|
| Q |
394 |
gaaccctgcgaatttcatctc |
414 |
Q |
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||||||||| ||||||||||| |
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| T |
38729877 |
gaaccctgctaatttcatctc |
38729897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 94 - 385
Target Start/End: Complemental strand, 385961 - 385674
Alignment:
| Q |
94 |
tcaagtagaactttggcagcaacatccacaagcttcttattagccagtagagataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattag |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
385961 |
tcaagtagaactttggcagcaacatccacaagcttcttattagccagtagagataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattag |
385862 |
T |
|
| Q |
194 |
tcattgaattgtacagtttgatggcatgatcaatttgtccagacgcagcatgcatttccaagagacaagcatacgtagatggagttggtagaaatccagc |
293 |
Q |
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||||||||||||||||||| |||||||||||||||||||| || | ||||||||||||||| |||||||| || |||||| ||||| ||||||||||||| |
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|
| T |
385861 |
tcattgaattgtacagtttcatggcatgatcaatttgtccggatgaagcatgcatttccaatagacaagcgtatgtagatagagttagtagaaatccagc |
385762 |
T |
|
| Q |
294 |
tttctccatatatatctgaaaatgcagacatatcaatatcaagcttccctgattttgcatgtgactcaatgatcaatgtaaacaagccaaag |
385 |
Q |
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||||||| || |||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| |
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| T |
385761 |
tttctcc----atgtctgaaaatgcagacatagcaatatcaagcttccctgattttgcatgagactcgatgatcaatgtatacaagccaaag |
385674 |
T |
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