View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_low_19 (Length: 422)
Name: NF0802_low_19
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 202 - 379
Target Start/End: Complemental strand, 3975991 - 3975814
Alignment:
| Q |
202 |
atctatgactagtaataatagaataaattccaattgccaattgatctctgtccttgaaaattggaaattctcccaaaattggcaaatctttgatacccaa |
301 |
Q |
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| T |
3975991 |
atctatgactagtaataatagaataaattccaattgccaattgatctctgtccttgaaaattggaaattctcccaaaattggcaaatctttgatacccaa |
3975892 |
T |
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| Q |
302 |
caaagcaatgagaaagaaagaaacatgctaattaaataacaccatagttttaaattgcaacacatccacaattgcacc |
379 |
Q |
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| T |
3975891 |
caaagcaatgagaaagaaagaaacatgctaattaaaaaacaccatagttttaaattgcaacacatccacaattgcacc |
3975814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 3976133 - 3976003
Alignment:
| Q |
11 |
acaatataaaacaatttaagaagtctctcaagagagtaaagttacctgccacccaaggaacctgcaattgtaaaatgcacatctatctcctgatactcta |
110 |
Q |
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| T |
3976133 |
acaatataaaacaatttaagaagtttctcaagagagtaaagttacctgccacccaaggaacctgcaattgtaaaatgcacatctatctcctgatactcta |
3976034 |
T |
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| Q |
111 |
actgccactgcttgccctgaaccctgccatg |
141 |
Q |
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| T |
3976033 |
actgccactgcttgccctgaaccctgccatg |
3976003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 3121399 - 3121313
Alignment:
| Q |
52 |
ttacctgccacccaaggaacctgcaattgtaaaatgcacatctatctcctgatactctaactgccactgcttgccctgaaccctgcc |
138 |
Q |
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| T |
3121399 |
ttacctgccatccaaggaacctacaattgtagaaggcacatcgatctgcagttactctaattgccactgcctgtcctgaaccctgcc |
3121313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 40925133 - 40925177
Alignment:
| Q |
374 |
tgcaccttaatgaatcaatttgcaaaggaatgaatgttgtttatg |
418 |
Q |
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| T |
40925133 |
tgcaccttaatgaatcaatttacaaaggaatgaatgttgtttatg |
40925177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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