View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0802_low_2 (Length: 790)

Name: NF0802_low_2
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0802_low_2
NF0802_low_2
[»] chr7 (2 HSPs)
chr7 (215-658)||(41875669-41876110)
chr7 (403-454)||(5269468-5269519)
[»] chr8 (3 HSPs)
chr8 (241-312)||(40868457-40868528)
chr8 (410-451)||(31705029-31705070)
chr8 (403-452)||(41620374-41620423)
[»] chr1 (3 HSPs)
chr1 (241-298)||(24817944-24818001)
chr1 (400-452)||(36641810-36641862)
chr1 (338-392)||(24817795-24817849)
[»] chr2 (1 HSPs)
chr2 (410-454)||(3423849-3423893)


Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 215 - 658
Target Start/End: Original strand, 41875669 - 41876110
Alignment:
Q  215 gagatgaagttgcgaatatattgcgacaagaaaccggtgctatatttataccttcttctaatgatggccgcatactgaggtagagtgtcgaatgttgatt 314  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41875669 gagatgaagttgcgtatatattacgacaagaaaccggtgctatatttataccttcttctaatgatggccgcatactgaggtagagtgtcgaatgttgatt 41875768  T
Q  315 aatgttgattatagatcatccaagacttatttagataaacaatttaattttgtgttagtagcaaaaacacttattatataagtacttacttataaataag 414  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41875769 aatgttgattatagatcatccaagacttatttagataaacaacttaattttgtgttagtagcaaaaacacttattatataagtacttacttataaataag 41875868  T
Q  415 ttatttctgtactaaaagataaaataaggtcaaattatttaatgtaagctataacctaatttttatccgttataatcatttttcagtgttgaattgattt 514  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41875869 ttatttctgtactaaaagataaaataaggtcaaattatttaatataagctataacctaatttttatccgttataatcatttttcagtgttgaattgattt 41875968  T
Q  515 tttgagctataataataagatctacaacaacatgttacttttatttattaaacttgtaaaacttgatgtctaaaatatgttatagggaactgtgacttgc 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41875969 tttgagctataataataagatctacaacaacatgttacttttatttattaaacttctaaaacttgatgtctaaaatatgttatagggaactgtgacttgc 41876068  T
Q  615 ttttgctaagcattgctctttgacatgtttttagttgatcttgc 658  Q
    |||||||||||||||||||||||||||  |||||||||||||||    
T  41876069 ttttgctaagcattgctctttgacatg--tttagttgatcttgc 41876110  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 5269468 - 5269519
Alignment:
Q  403 cttataaataagttatttctgtactaaaagataaaataaggtcaaattattt 454  Q
    |||||| |||| |||||||| || ||||||||||||||| ||||||||||||    
T  5269468 cttatatataaattatttctttaataaaagataaaataaagtcaaattattt 5269519  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 40868528 - 40868457
Alignment:
Q  241 caagaaaccggtgctatatttataccttcttctaatgatggccgcatactgaggtagagtgtcgaatgttga 312  Q
    |||||||| |||||||| ||||||| | ||| ||||||||| |||||||||||||| | ||| |||||||||    
T  40868528 caagaaactggtgctatttttatacatccttataatgatgggcgcatactgaggtacactgttgaatgttga 40868457  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 451
Target Start/End: Original strand, 31705029 - 31705070
Alignment:
Q  410 ataagttatttctgtactaaaagataaaataaggtcaaatta 451  Q
    ||||| |||||||||||||||||||||||| | |||||||||    
T  31705029 ataagctatttctgtactaaaagataaaatcatgtcaaatta 31705070  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 41620423 - 41620374
Alignment:
Q  403 cttataaataagttatttctgtactaaaagataaaataaggtcaaattat 452  Q
    |||||| ||||||||||| ||||  |||||||||||||| ||||||||||    
T  41620423 cttatatataagttatttttgtaacaaaagataaaataaagtcaaattat 41620374  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 24818001 - 24817944
Alignment:
Q  241 caagaaaccggtgctatatttataccttcttctaatgatggccgcatactgaggtaga 298  Q
    ||||||||  ||||||| | |||||||||||| ||||||||||||||| |||||||||    
T  24818001 caagaaacaagtgctatctatataccttcttcaaatgatggccgcataatgaggtaga 24817944  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 36641810 - 36641862
Alignment:
Q  400 ttacttataaataagttatttctgtactaaaagataaaataaggtcaaattat 452  Q
    ||||||||| ||||||||||||| ||  |||||||||||||| ||||||||||    
T  36641810 ttacttatatataagttatttctataacaaaagataaaataaagtcaaattat 36641862  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 338 - 392
Target Start/End: Complemental strand, 24817849 - 24817795
Alignment:
Q  338 gacttatttagataaacaatttaattttgtgttagtagcaaaaacacttattata 392  Q
    ||||||||||||||||||| |||| || ||||| ||| || ||||||||||||||    
T  24817849 gacttatttagataaacaacttaacttagtgtttgtaacataaacacttattata 24817795  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 410 - 454
Target Start/End: Complemental strand, 3423893 - 3423849
Alignment:
Q  410 ataagttatttctgtactaaaagataaaataaggtcaaattattt 454  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||    
T  3423893 ataagttatttttgtaccaaaagataaaataaagtcaaattattt 3423849  T

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