View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_low_20 (Length: 418)
Name: NF0802_low_20
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_20 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 14 - 418
Target Start/End: Original strand, 893513 - 893917
Alignment:
| Q |
14 |
aggacaaaaagaaatcactaattgtatccatatacataagtaccatactcattgctctcaaagatgcgcatgttttctaaaactacactttttgttcaga |
113 |
Q |
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| T |
893513 |
aggacaaaaagaaatcactaattgtatccatatacataagtaccatactcattgctctcaaagatgcgcatgttttctaaaactacactttttgttcaga |
893612 |
T |
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| Q |
114 |
aaagagaagtgtaaaagttaaaatattgattttgaaaatacaacagaagaattagaagaaaaatcagagaaattaaataaacccgagacatgagatggga |
213 |
Q |
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| T |
893613 |
aaagagaagtgtaaaagttaaaatattgattttgaaaatacaacagaagaattagaagaaaaatcagagaaattaaataaacccgagacatgagatggga |
893712 |
T |
|
| Q |
214 |
aaaacaaagataattaaattgaaacaaatgaattaaacagtaaatcacataacatgatattacaggatttgaatcaacatatgaattcaacaatttctga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
893713 |
aaaacaaagataattaaattgaaacaaatgaattaaacagtaaatcacataacatgatattacaggatttgaatcaacatatgaattcaacaatttctga |
893812 |
T |
|
| Q |
314 |
ataaatctaactaaataaagaaatatataagagagattaaaaaccgaaatgcaccgtaactgtccgtctattttaagaggaaagagcatgaacaaccata |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
893813 |
ataaatctaactaaataaagaaatatataagagagattaaaaaccgaaatgcaccgtaactgtccgtctattttaagaggaaagagcatgaacaaccata |
893912 |
T |
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| Q |
414 |
gtcac |
418 |
Q |
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||||| |
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| T |
893913 |
gtcac |
893917 |
T |
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