View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_low_21 (Length: 402)
Name: NF0802_low_21
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 13897192 - 13896860
Alignment:
| Q |
13 |
aatatcgatggttttgagaggtgcaagaaccatcttcatggcgtccaactttatcaaacagatattgttcccattcaggttgttaaccaataaaaacaac |
112 |
Q |
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| T |
13897192 |
aatatcgattgttttgagaggtgcaagaaccatcttcatggcgtccaactttatcaaacagatattgttcccattcaggttgttaaccaataaaaacaac |
13897093 |
T |
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| Q |
113 |
gaaagtttcctgaaatacatttttctagctagcaattcatctgatctacatcacaatggttcacttcaagagtctcacaatctattagcaagttaaaatg |
212 |
Q |
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| T |
13897092 |
gaaagtttcctgaaatacatttttctagctagcaattcatctgatctacatcacaatggttcacgtcaagagtctcacaatctattagcaagttaaaatg |
13896993 |
T |
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| Q |
213 |
atacataatcttgcaaatgaaaatatannnnnnnnaacaaataaatgaaacctaatgttttcatgaactattttaaagattccaattatgataatcaagt |
312 |
Q |
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| T |
13896992 |
atccataatcttgcaaatgaaaatatattttttttaataaataaatgaaacctaatgttttcatgaactattttaaagattccaattatgataatcaagt |
13896893 |
T |
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| Q |
313 |
aaaataaccaatatttgcgttgttaagtatcac |
345 |
Q |
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| T |
13896892 |
aaaataaccaatatttgcgttgttaagtatcac |
13896860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 12574036 - 12574114
Alignment:
| Q |
138 |
tagctagcaattcatctgatctacatcacaatggttcacttcaagagtctcaca---atctattagcaagttaaaatga |
213 |
Q |
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| T |
12574036 |
tagctagcatttcatcttctctccatcacaatggttcacttcaagagtctcacatctaattattagcaagttaaaatga |
12574114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 4597539 - 4597511
Alignment:
| Q |
161 |
catcacaatggttcacttcaagagtctca |
189 |
Q |
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| T |
4597539 |
catcacaatggttcacttcaagagtctca |
4597511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 39942289 - 39942237
Alignment:
| Q |
161 |
catcacaatggttcacttcaagagtctcacaatctattagcaagttaaaatga |
213 |
Q |
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|||||||||||||||||||| ||||||| || | |||||| |||||||||||| |
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| T |
39942289 |
catcacaatggttcacttcatgagtctcgcattttattagaaagttaaaatga |
39942237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 28805237 - 28805183
Alignment:
| Q |
137 |
ctagctagcaattcatctgatctacatcacaatggttcacttcaagagtctcaca |
191 |
Q |
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| T |
28805237 |
ctagctagcatttcatcttatctccatcacaatggttcgctctaagagtctcaca |
28805183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 27794288 - 27794353
Alignment:
| Q |
148 |
ttcatctgatctacatcacaatggttcacttcaagagtctcacaatctattagcaagttaaaatga |
213 |
Q |
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| T |
27794288 |
ttcatcttctctccatcacattggttcacttcaagagcctcacatcttatgagcaagttaaaatga |
27794353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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