View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0802_low_22 (Length: 393)

Name: NF0802_low_22
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0802_low_22
NF0802_low_22
[»] chr6 (8 HSPs)
chr6 (205-316)||(31442516-31442627)
chr6 (206-261)||(26840415-26840470)
chr6 (205-275)||(31665629-31665700)
chr6 (206-314)||(7867910-7868018)
chr6 (208-275)||(15296147-15296215)
chr6 (202-261)||(26839985-26840044)
chr6 (206-312)||(826696-826802)
chr6 (206-290)||(20915983-20916067)
[»] chr7 (5 HSPs)
chr7 (206-316)||(20077302-20077412)
chr7 (206-262)||(48850726-48850782)
chr7 (206-316)||(4407779-4407887)
chr7 (206-261)||(11072196-11072251)
chr7 (206-262)||(39742308-39742364)
[»] chr8 (7 HSPs)
chr8 (204-316)||(26981033-26981145)
chr8 (206-316)||(26083903-26084013)
chr8 (205-275)||(42315341-42315412)
chr8 (206-320)||(23828343-23828458)
chr8 (205-252)||(7496757-7496804)
chr8 (244-316)||(5334311-5334383)
chr8 (206-262)||(42932716-42932772)
[»] chr2 (6 HSPs)
chr2 (209-262)||(21922337-21922390)
chr2 (206-276)||(38996520-38996590)
chr2 (205-262)||(6667462-6667519)
chr2 (205-261)||(32281485-32281541)
chr2 (206-288)||(28125536-28125618)
chr2 (205-262)||(28926074-28926132)
[»] chr5 (4 HSPs)
chr5 (206-275)||(37337323-37337393)
chr5 (205-275)||(26110687-26110758)
chr5 (207-262)||(22780073-22780128)
chr5 (244-316)||(9045161-9045233)
[»] chr4 (8 HSPs)
chr4 (206-275)||(12094856-12094925)
chr4 (206-262)||(9199512-9199568)
chr4 (206-262)||(24257703-24257759)
chr4 (209-276)||(9451245-9451312)
chr4 (217-316)||(10427608-10427706)
chr4 (205-279)||(6898749-6898823)
chr4 (206-316)||(9199750-9199860)
chr4 (206-262)||(27067874-27067930)
[»] chr3 (7 HSPs)
chr3 (205-262)||(15291460-15291517)
chr3 (205-276)||(39484808-39484880)
chr3 (206-262)||(1529165-1529222)
chr3 (205-262)||(52041398-52041455)
chr3 (206-253)||(49235500-49235547)
chr3 (205-262)||(15996393-15996450)
chr3 (204-236)||(1141742-1141774)
[»] chr1 (3 HSPs)
chr1 (206-261)||(15700721-15700776)
chr1 (205-255)||(44508600-44508650)
chr1 (218-255)||(24819195-24819232)


Alignment Details
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 316
Target Start/End: Original strand, 31442516 - 31442627
Alignment:
Q  205 tatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgc 304  Q
    |||||||||| ||||||||||||||||||||| || || ||||||||||||||||||| | |||| ||||||  ||||| |||||| || |||| | |||    
T  31442516 tatctttcttactaaagcttgtttggtcaagcaatcacataccctaattttaacctaatattttccctccatcatccaagcattaaattctcctaagtgc 31442615  T
Q  305 ttatcctaatca 316  Q
    || |||||||||    
T  31442616 ttttcctaatca 31442627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 26840415 - 26840470
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaaccta 261  Q
    ||||||||||||||||||||||||||||||| || | | |||||||| ||||||||    
T  26840415 atctttctttctaaagcttgtttggtcaagccatcattaaccctaatcttaaccta 26840470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 31665700 - 31665629
Alignment:
Q  205 tatctttctttctaaagcttgtttggtcaagctataacttaccctaatt-ttaacctaaaaatttctctcca 275  Q
    |||||||||| |||||||||||||||||||||||| | | ||||||||| ||||||||| | |||| |||||    
T  31665700 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 31665629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 7868018 - 7867910
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgct 305  Q
    ||||||||| ||||||||| | ||||||||||||  | ||||||||||| | ||||| | |||| ||||||||| ||| |||| | |||| || | ||||    
T  7868018 atctttcttactaaagcttatctggtcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagcatttaatttttctaagtgct 7867919  T
Q  306 tatcctaat 314  Q
    |||| ||||    
T  7867918 tatcttaat 7867910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 15296147 - 15296215
Alignment:
Q  208 ctttctttctaaagcttgtttggtcaagctataacttaccctaa-ttttaacctaaaaatttctctcca 275  Q
    ||||||| ||||||||||||| |||||||||||| | ||||||| ||||||||||| | |||| |||||    
T  15296147 ctttcttactaaagcttgttttgtcaagctataagtaaccctaatttttaacctaatattttccctcca 15296215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 26839985 - 26840044
Alignment:
Q  202 atgtatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaaccta 261  Q
    |||||||||||||||||||| ||||||| |||||| || | | |||||||| ||||||||    
T  26839985 atgtatctttctttctaaagtttgtttgatcaagccatcattaaccctaatcttaaccta 26840044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 312
Target Start/End: Complemental strand, 826802 - 826696
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgct 305  Q
    ||||||||| ||||| ||||| ||||||||||||   | ||| |||||||||||||| | |||| |||||| | |||| |||| | ||||| ||| ||||    
T  826802 atctttcttactaaaacttgtctggtcaagctattgttcaccttaattttaacctaatattttccctccatcgcccaatcatttaattttcgttagtgct 826703  T
Q  306 tatccta 312  Q
    | |||||    
T  826702 tttccta 826696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 20916067 - 20915983
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaa 290  Q
    ||||||||| ||||||||||| || |||||| |||   |||| |||||||||||||| | |||| ||||||  ||||| ||||||    
T  20916067 atctttcttactaaagcttgtctgatcaagcaatatgataccttaattttaacctaatattttccctccatcatccaagcattaa 20915983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 206 - 316
Target Start/End: Complemental strand, 20077412 - 20077302
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgct 305  Q
    ||||||||| ||||||||||||||||||||| ||| | ||||||||||||||||||| | |||| ||||||  ||||| |||||| ||  ||||| ||||    
T  20077412 atctttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccatcatccaagcattaaattcaccttagtgct 20077313  T
Q  306 tatcctaatca 316  Q
    | |||||||||    
T  20077312 tttcctaatca 20077302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 48850726 - 48850782
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 262  Q
    ||||||||||||||||||||| || |||||||||   |||||||||| |||||||||    
T  48850726 atctttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaa 48850782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 316
Target Start/End: Original strand, 4407779 - 4407887
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgct 305  Q
    ||||||||| |||||||  || ||||||||| ||| | ||||||||||||||||||| | |||| ||||||   |||| |||||| || |||||| || |    
T  4407779 atctttcttactaaagc--gtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcacccaaacattaaattctccttagtgtt 4407876  T
Q  306 tatcctaatca 316  Q
    | |||||||||    
T  4407877 tttcctaatca 4407887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 11072251 - 11072196
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaaccta 261  Q
    |||||||||||||||||||||  |||||||| ||  || |||||||||||||||||    
T  11072251 atctttctttctaaagcttgtccggtcaagcaatccctaaccctaattttaaccta 11072196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 39742364 - 39742308
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 262  Q
    ||||||||| |||||||||||||| |||||||||   | |||||||| |||||||||    
T  39742364 atctttcttactaaagcttgtttgatcaagctattgataaccctaatcttaacctaa 39742308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 26981033 - 26981145
Alignment:
Q  204 gtatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattg 303  Q
    ||||||||||| |||||||||||||| |||||| ||| | ||||||||||||||||||| | |||  ||||||  ||||| |||||| || |||||| ||    
T  26981033 gtatctttcttactaaagcttgtttgatcaagcaatatcataccctaattttaacctaatatttttcctccatcatccaagcattaaattctccttagtg 26981132  T
Q  304 cttatcctaatca 316  Q
     || |||||||||    
T  26981133 tttttcctaatca 26981145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 316
Target Start/End: Original strand, 26083903 - 26084013
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgct 305  Q
    ||||||||| ||||||||||| ||||||||| ||| | ||||||||||||||||||| | |||| ||||||  || || |||||| || | |||| ||||    
T  26083903 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcatcaaagcattaaattcttcttagtgct 26084002  T
Q  306 tatcctaatca 316  Q
    | |||||||||    
T  26084003 tttcctaatca 26084013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 42315341 - 42315412
Alignment:
Q  205 tatctttctttctaaagcttgtttggtcaagctataacttaccctaatt-ttaacctaaaaatttctctcca 275  Q
    |||||||||| |||||||||||||||||||||||| | | ||||||||| ||||||||| | |||| |||||    
T  42315341 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 42315412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 320
Target Start/End: Original strand, 23828343 - 23828458
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaa-ttttaacctaaaaatttctctccattg-tccaaccattaatttttccttattg 303  Q
    ||||||||| ||| |||||||||||||||||||| | | ||||||| ||||||||||| | |||| ||||| || | || || ||||||  |||||| ||    
T  23828343 atctttcttactagagcttgtttggtcaagctattagtaaccctaatttttaacctaatattttccctccaatgcttcagcc-ttaattactccttagtg 23828441  T
Q  304 cttatcctaatcagcat 320  Q
     ||||||||||||||||    
T  23828442 tttatcctaatcagcat 23828458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 7496757 - 7496804
Alignment:
Q  205 tatctttctttctaaagcttgtttggtcaagctataacttaccctaat 252  Q
    |||||||||| |||||||||||||| |||||||||| || ||||||||    
T  7496757 tatctttcttactaaagcttgtttgatcaagctatagctgaccctaat 7496804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 5334311 - 5334383
Alignment:
Q  244 taccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgcttatcctaatca 316  Q
    ||||||||||||||||||| | |||| ||||||  ||||| |||||| || || ||| ||||| |||||||||    
T  5334311 taccctaattttaacctaagattttccctccatcatccaagcattaaattctctttaatgcttttcctaatca 5334383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 42932716 - 42932772
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 262  Q
    ||||||||| ||||||||||| || |||||| ||| | || ||||||||||||||||    
T  42932716 atctttcttactaaagcttgtctgatcaagcaatatcatatcctaattttaacctaa 42932772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 21922337 - 21922390
Alignment:
Q  209 tttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 262  Q
    |||||||||||||||||| || |||||||||||||||||||||| |||||||||    
T  21922337 tttctttctaaagcttgtctgatcaagctataacttaccctaatcttaacctaa 21922390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 38996590 - 38996520
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccat 276  Q
    ||||||||| ||||||||||| || ||||||||||  |||||||||||||||||||| | |||| ||||||    
T  38996590 atctttcttactaaagcttgtctgatcaagctatatgttaccctaattttaacctaatattttccctccat 38996520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 6667462 - 6667519
Alignment:
Q  205 tatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 262  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||  ||||||||    
T  6667462 tatctttctttctaaagcttgtttggtcaagctattgtttaccctaatcctaacctaa 6667519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 32281485 - 32281541
Alignment:
Q  205 tatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaaccta 261  Q
    |||||||||| |||||| ||||||||||||||||| | | |||||||||||||||||    
T  32281485 tatctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaaccta 32281541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 28125536 - 28125618
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccatt 288  Q
    ||||||||| ||||||||||| ||||||||||||  | ||||||||||| | ||||| | |||| ||||||||| ||| ||||    
T  28125536 atctttcttactaaagcttgtctggtcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagcatt 28125618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 28926074 - 28926132
Alignment:
Q  205 tatctttctttctaaagcttgtttggtcaagctataacttaccctaatt-ttaacctaa 262  Q
    |||||||||| ||||||||||| |||||||||||| | | ||||||||| |||||||||    
T  28926074 tatctttcttactaaagcttgtctggtcaagctattagtaaccctaattcttaacctaa 28926132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 37337323 - 37337393
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaa-ttttaacctaaaaatttctctcca 275  Q
    ||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||||| | |||| |||||    
T  37337323 atctttcttactaaagcttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 37337393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 26110687 - 26110758
Alignment:
Q  205 tatctttctttctaaagcttgtttggtcaagctataacttaccctaa-ttttaacctaaaaatttctctcca 275  Q
    |||||||||| ||||| |||||||||||||||||||| | ||||||| ||||||||||| | |||| |||||    
T  26110687 tatctttcttactaaaacttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 26110758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 22780128 - 22780073
Alignment:
Q  207 tctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 262  Q
    |||||||||||||||||||| || |||||||||   |||||||||| |||||||||    
T  22780128 tctttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaa 22780073  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 9045161 - 9045233
Alignment:
Q  244 taccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgcttatcctaatca 316  Q
    ||||||||||||||||||| | |||| ||||||  || || |||||| || |||||| ||||| |||||||||    
T  9045161 taccctaattttaacctaatattttccctccatcatcaaaacattaaattctccttagtgcttttcctaatca 9045233  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 12094925 - 12094856
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctcca 275  Q
    ||||||||| |||||||||||||||||||||||| |   |||||||||||||||||| | |||| |||||    
T  12094925 atctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattttccctcca 12094856  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 9199512 - 9199568
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 262  Q
    ||||||||| ||||||||||| ||||||||| ||| | |||||||||||||||||||    
T  9199512 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaa 9199568  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 24257703 - 24257759
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 262  Q
    ||||||||| ||||||||||||||||||||| ||   | ||||||||||||||||||    
T  24257703 atctttcttactaaagcttgtttggtcaagcaattgttcaccctaattttaacctaa 24257759  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 9451245 - 9451312
Alignment:
Q  209 tttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccat 276  Q
    |||||| ||||||||||| ||||||||||||   | |||||||||||||||||| | |||| ||||||    
T  9451245 tttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccctccat 9451312  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 316
Target Start/End: Complemental strand, 10427706 - 10427608
Alignment:
Q  217 taaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgcttatcctaatca 316  Q
    ||||| |||||||||||||| ||| | ||||||||||||||||| || ||||| ||||||  ||||| |||||| || | |||| || || |||||||||    
T  10427706 taaaggttgtttggtcaagcaatatcataccctaattttaacct-aatatttccctccatcatccaagcattaaattcttcttagtgtttttcctaatca 10427608  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 6898823 - 6898749
Alignment:
Q  205 tatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgt 279  Q
    |||||||||| |||||||||||||| |||||||||   | |||||||| ||||||||| | ||||  ||||||||    
T  6898823 tatctttcttactaaagcttgtttgatcaagctattggtaaccctaatcttaacctaatattttccgtccattgt 6898749  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 316
Target Start/End: Original strand, 9199750 - 9199860
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgct 305  Q
    ||||||||| ||||||||||| ||||||||| ||| | || || | | ||||||||| | |||| ||||||  ||||| |||||| || |||||| | ||    
T  9199750 atctttcttactaaagcttgtctggtcaagcaatatcatatcccactattaacctaatattttccctccatcatccaagcattaaattctccttagttct 9199849  T
Q  306 tatcctaatca 316  Q
    | |||||||||    
T  9199850 tttcctaatca 9199860  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 27067874 - 27067930
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 262  Q
    ||||||||| ||||||||||||||||||| ||||    |||||||||||||| ||||    
T  27067874 atctttcttactaaagcttgtttggtcaaactatcctataccctaattttaatctaa 27067930  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 15291460 - 15291517
Alignment:
Q  205 tatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 262  Q
    |||||||||| ||||||||||||||||||||||||   |||||||||| |||||||||    
T  15291460 tatctttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaa 15291517  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 276
Target Start/End: Complemental strand, 39484880 - 39484808
Alignment:
Q  205 tatctttctttctaaagcttgtttggtcaagctataactt-accctaattttaacctaaaaatttctctccat 276  Q
    |||||||||| |||||||||||||||||||||||||  || |||||| ||||||||||| | |||| ||||||    
T  39484880 tatctttcttactaaagcttgtttggtcaagctatatgttcaccctagttttaacctaatattttccctccat 39484808  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 1529165 - 1529222
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaatt-ttaacctaa 262  Q
    ||||||||| |||||||||||||||||||||||| | | ||||||||| |||||||||    
T  1529165 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaa 1529222  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 52041455 - 52041398
Alignment:
Q  205 tatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 262  Q
    |||||||||| ||||||||||| ||||||||||||   | ||||||||||||||||||    
T  52041455 tatctttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaa 52041398  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 49235547 - 49235500
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaatt 253  Q
    ||||||||| |||||| ||||||||||||||||| | |||||||||||    
T  49235547 atctttcttactaaagtttgtttggtcaagctatcatttaccctaatt 49235500  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 15996450 - 15996393
Alignment:
Q  205 tatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 262  Q
    |||||||||| ||||||||||| || |||||||||   ||||||||||| ||||||||    
T  15996450 tatctttcttactaaagcttgtctgatcaagctattgtttaccctaattctaacctaa 15996393  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 1141742 - 1141774
Alignment:
Q  204 gtatctttctttctaaagcttgtttggtcaagc 236  Q
    ||||||||||| |||||||||||||||||||||    
T  1141742 gtatctttcttactaaagcttgtttggtcaagc 1141774  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 15700721 - 15700776
Alignment:
Q  206 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaaccta 261  Q
    ||||||||| |||||| ||||||||||||||||| | | |||||||||||||||||    
T  15700721 atctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaaccta 15700776  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 44508600 - 44508650
Alignment:
Q  205 tatctttctttctaaagcttgtttggtcaagctataacttaccctaatttt 255  Q
    |||||||||||||||||||||| || ||||||||| ||| |||||||||||    
T  44508600 tatctttctttctaaagcttgtctgatcaagctattactaaccctaatttt 44508650  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 24819195 - 24819232
Alignment:
Q  218 aaagcttgtttggtcaagctataacttaccctaatttt 255  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  24819195 aaagcttgtttggtcaagctattactaaccctaatttt 24819232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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