View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_low_23 (Length: 384)
Name: NF0802_low_23
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 120 - 362
Target Start/End: Original strand, 385438 - 385699
Alignment:
| Q |
120 |
tccatatagataagaaaaaaggaacaaagataaaagaactatataagagatgaaaatcctttccgatgatgaaacaataacaacttaagagaagatgaag |
219 |
Q |
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| T |
385438 |
tccatatagataagaaaaaaggaacaaagataaaagaactatatgagagatgaaaatcctttccgatcatcaaacaataacaacttaagagaagatgaag |
385537 |
T |
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| Q |
220 |
gagtatttagccccaccaagccaaaatctcctccatgacccaagtttgcaagcttatcaacacattgatt-------------------ttgatcttata |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
385538 |
gagtatttagccccaccaaaccaaaatctcctccatgacccaagtttgcaagcttatcaacacattgattaactttccgataaacatgcttgatcttaca |
385637 |
T |
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| Q |
301 |
cttttagtgaccatgatccataagatatagcatctattggagaagaggtaaaagatgatgat |
362 |
Q |
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| T |
385638 |
cttttagtgaccatgatccataagatatatcatctattggagaagaggtaaaagatgatgat |
385699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 28559619 - 28559537
Alignment:
| Q |
195 |
aataacaacttaagagaagatgaaggagtatttagccccaccaagccaaaatctcctccatgacccaagtttgcaagcttatca |
278 |
Q |
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||||||||||||||||| | || |||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28559619 |
aataacaacttaagagatcaagatggag-atttagctccaccaagccaaaatctcctccatgacctaagtttgcaagcttatca |
28559537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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