View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_low_26 (Length: 372)
Name: NF0802_low_26
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 366
Target Start/End: Complemental strand, 47103384 - 47103029
Alignment:
| Q |
10 |
aacaatatctcaataagatgatggcattggtacaacttgtctccttagtgttgatggggaaaacacgcaggatttggtgatatagaaaagtgcatagtta |
109 |
Q |
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| T |
47103384 |
aacaatatctcaataagatgatggtat-ggtacaacttgtctctttagtgttgatggggaaaacacgcagaatttggtgatatagaaaagtgcatagtta |
47103286 |
T |
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| Q |
110 |
gacgcaggaataaatctcagtcgttgatatcagactagacaatttaaattgcacattagtttaatacagttaaatgatctcggtcgttgatctaaattaa |
209 |
Q |
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| T |
47103285 |
gacgcaggaataaatctcagccgttgacatcagattagaaaatttaaattgcacattagtttaatatagttaaatgatctcggtcgttgatctaaattaa |
47103186 |
T |
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| Q |
210 |
acggacataatctgttacattatcaacaacaagaaaacaaaatcccttgaagtcaatggagcaaggggcacttgcaagtttcaaatgtggcagggtttat |
309 |
Q |
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| T |
47103185 |
acggtcataatctgttacattgtcaacaacaagaaaacaaaatcccttgaagtcaatggagcaaggggcacttgcaagtttcacatgtggcagggtttat |
47103086 |
T |
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| Q |
310 |
aaaatcaagaaaaatgttggttgatcaaacaaattggaatttggattacatgcattc |
366 |
Q |
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| T |
47103085 |
aaaatcaagaaaaatgttggttgatcaaacaaattggaatttggattacatgcattc |
47103029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 45519806 - 45519941
Alignment:
| Q |
78 |
aggatttggtgatatagaaaagtgcatagttagacgcaggaataaatctcagtcgttgatatcagactagacaatttaaattgcacattagtttaataca |
177 |
Q |
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| T |
45519806 |
aggatttggtgctctagaaaagcacatagtttgacgcaataacaaatctcagtcgttggtatcatatcagacggtttaaattacacatcagtttaacaca |
45519905 |
T |
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| Q |
178 |
gttaaatgatctcggtcgttgatctaaattaaacgg |
213 |
Q |
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| T |
45519906 |
attgaatgattttagccgttaatctaaattgaacgg |
45519941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 18425744 - 18425656
Alignment:
| Q |
118 |
aataaatctcagtcgttgatatcagactagacaatttaaattgcacattagtttaatacagttaaatgatctcggtcgttgatctaaat |
206 |
Q |
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| T |
18425744 |
aataaatctcggtcgttgatatcagaacggacaattcatattagacatcagtttaacatagttgaatgatctgagtcgttgatataaat |
18425656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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