View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_low_28 (Length: 365)
Name: NF0802_low_28
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_28 |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 13852463 - 13852263
Alignment:
| Q |
1 |
agctgcataaaatgatgctttcttttcttcataagggatgataaaatcatgaacatgaagtgttccttttgtcccaacagcagttatatccattgttagg |
100 |
Q |
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| T |
13852463 |
agctgcataaaatgatgctttcttttcttcataagggatgataaaatcatgaacatgaagtgttccttttgtcccaacagcagttatatccattgttagg |
13852364 |
T |
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| Q |
101 |
ttagataagaaagagcaatagaatgttgctactcttccatcttgccagtataaagaagcaccgcaagataataatactccagctttattaagcacaggtt |
200 |
Q |
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| T |
13852363 |
ttagataagaaagagcaatagaatgttgctactcttccatcttgccagtataaagaagcaccgcaagataataatactccagctttattaagcactggtt |
13852264 |
T |
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| Q |
201 |
c |
201 |
Q |
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| T |
13852263 |
c |
13852263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 13856342 - 13856148
Alignment:
| Q |
1 |
agctgcataaaatgatgctttcttttcttcataagggatgataaaatcatgaacatgaagtgttccttttgtcccaacagcagttatatccattgttagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13856342 |
agctgcataaaatgatgctttcttttcttcataagggatgataaaatcatgaacatgaagtgttccttttgtcccaacagcagttatatccattgttaag |
13856243 |
T |
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| Q |
101 |
ttagataagaaagagcaatagaatgttgctactcttccatcttgccagtataaagaagcaccgcaagataataatactccagctttattaagcac |
195 |
Q |
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| T |
13856242 |
ttagataagaaagagcaatagaatgttgctactcttccatcttcccaatataaagaagcaccacaagataataatactccagctttattaagcac |
13856148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 212 - 341
Target Start/End: Original strand, 7247255 - 7247384
Alignment:
| Q |
212 |
ctgcacctgcctttgttgttgctgctgctgcccttgtctctgacatcttttacagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7247255 |
ctgcacctgcctttgttgttgctgctgctgcccttgtctctgacatcttttacacaaattcataaactaatgtacaaagaaaaaattaaatgcaaatgca |
7247354 |
T |
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| Q |
312 |
tgttagtccatgcacctttggttttgctgt |
341 |
Q |
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| T |
7247355 |
tgttagtccatgcacctttggttttgctgt |
7247384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 332
Target Start/End: Complemental strand, 25321474 - 25321379
Alignment:
| Q |
237 |
tgctgcccttgtctctgacatcttttacagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttgg |
332 |
Q |
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| T |
25321474 |
tgctgcctttgtctctaacatcttttacaaaaattcactaataaatgtacaaataaaaactaaatttcaaatgcatgttggtccattcacctttgg |
25321379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 43865385 - 43865492
Alignment:
| Q |
26 |
tcttcataagggatgataaaatcatgaacatgaagtgttccttttgtcccaacagcagttatatccattgttaggttagataagaaagagcaatagaatg |
125 |
Q |
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||||||||||| || |||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||| | ||| | |||||||| |||| |||| |
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| T |
43865385 |
tcttcataaggaataataaaatcatgaacatgaagagttccttttgttccaatagctgttatatccattgtcaagtttgccaagaaagaacaatgaaatg |
43865484 |
T |
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| Q |
126 |
ttgctact |
133 |
Q |
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| T |
43865485 |
tagctact |
43865492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 332
Target Start/End: Original strand, 18409 - 18505
Alignment:
| Q |
237 |
tgctgcccttgtctctgacatctttt-acagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttgg |
332 |
Q |
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||||||| ||||| |||||||||||| ||| ||||||| || |||||||||||||||| | || |||||||||||||| |||||| ||||||||| |
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| T |
18409 |
tgctgcctttgtcactgacatctttttacaaaaattcacaaggaaatgtacaaagaaaaactaaatttcaaatgcatgttggtccattcacctttgg |
18505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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