View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0802_low_31 (Length: 341)

Name: NF0802_low_31
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0802_low_31
NF0802_low_31
[»] chr5 (14 HSPs)
chr5 (187-262)||(37412501-37412576)
chr5 (143-247)||(37429616-37429720)
chr5 (114-250)||(37533972-37534108)
chr5 (114-249)||(37824768-37824903)
chr5 (114-249)||(37399964-37400099)
chr5 (114-249)||(37697660-37697795)
chr5 (114-249)||(37712497-37712632)
chr5 (105-239)||(37595207-37595341)
chr5 (114-239)||(37436590-37436715)
chr5 (114-239)||(37640755-37640880)
chr5 (100-152)||(37412452-37412504)
chr5 (114-241)||(37392113-37392237)
chr5 (114-249)||(37703541-37703676)
chr5 (114-182)||(37381487-37381555)
[»] chr4 (2 HSPs)
chr4 (114-250)||(24216892-24217028)
chr4 (105-248)||(16842019-16842162)
[»] chr3 (1 HSPs)
chr3 (114-239)||(14553921-14554046)


Alignment Details
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 37412501 - 37412576
Alignment:
Q  187 accttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctc 262  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412501 accttattgtaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctc 37412576  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 37429720 - 37429616
Alignment:
Q  143 ctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggat 242  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||||||| ||| ||||||||| ||| ||||||||||||||| ||||||||||||||     
T  37429720 ctctttaccaaatcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggac 37429621  T
Q  243 ctctc 247  Q
    |||||    
T  37429620 ctctc 37429616  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 114 - 250
Target Start/End: Complemental strand, 37534108 - 37533972
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    ||||||||||||||  |||||||| | | |||||||||||||||||||  | | |||||||||||||||||  |||||| |||  ||||||||| || ||    
T  37534108 ttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaatgataaccttagtggtcaacttccaaagtcca 37534009  T
Q  214 actggagcactcctctaaggtacttggatctctcttt 250  Q
    |||||||||||||||||||||||||||  ||||||||    
T  37534008 actggagcactcctctaaggtacttggtcctctcttt 37533972  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 249
Target Start/End: Complemental strand, 37824903 - 37824768
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    |||||||||||| || |||||||| | | |||||||||||||||||||  | | |||||||||| |||| |  |||||| |||  ||||||||| || ||    
T  37824903 ttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcataaccttagtggtcaacttccaaagtcca 37824804  T
Q  214 actggagcactcctctaaggtacttggatctctctt 249  Q
    |||||||||||||||||||||||||||| |||||||    
T  37824803 actggagcactcctctaaggtacttggacctctctt 37824768  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 114 - 249
Target Start/End: Original strand, 37399964 - 37400099
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    ||||||||||||||  |||||||| | | |||||||||||||||||||  | | |||||||||| |||| |  |||||| |||  ||||||||| || ||    
T  37399964 ttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtcca 37400063  T
Q  214 actggagcactcctctaaggtacttggatctctctt 249  Q
    |||||||||||||||||||||||||||  |||||||    
T  37400064 actggagcactcctctaaggtacttggtcctctctt 37400099  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 114 - 249
Target Start/End: Complemental strand, 37697795 - 37697660
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    |||||||||||| || |||||||| | | |||||||||||||||||||  | | |||||||||| |||| |  |||||| |||  ||||||||| || ||    
T  37697795 ttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtcca 37697696  T
Q  214 actggagcactcctctaaggtacttggatctctctt 249  Q
    ||||||||||||||||||||||||| || |||||||    
T  37697695 actggagcactcctctaaggtacttagacctctctt 37697660  T

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Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 114 - 249
Target Start/End: Complemental strand, 37712632 - 37712497
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    |||||||||||| || |||||||| | | |||||||||||||||||||  | | |||||||||| |||| |  |||||| |||  ||||||||| || ||    
T  37712632 ttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtcca 37712533  T
Q  214 actggagcactcctctaaggtacttggatctctctt 249  Q
    |||||||||||||||||||||||||||  |||||||    
T  37712532 actggagcactcctctaaggtacttggtcctctctt 37712497  T

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Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 37595341 - 37595207
Alignment:
Q  105 aacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttc 204  Q
    |||||| | ||||||||||||||  |||||||| | | |||||||||||||||||||  | | |||||||||| ||||||  |||||| |||  ||||||    
T  37595341 aacactgggttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttc 37595242  T
Q  205 caatgttcaactggagcactcctctaaggtacttg 239  Q
    ||| || ||||| ||||||||||||||||||||||    
T  37595241 caaagtccaacttgagcactcctctaaggtacttg 37595207  T

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Target: chr5; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 37436715 - 37436590
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    ||||||||||||||  |||||||| | | |||||||||||||||||||  | | |||||||||| |||| |  |||||| |||  ||||||||| || ||    
T  37436715 ttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtcca 37436616  T
Q  214 actggagcactcctctaaggtacttg 239  Q
    ||||||||||||||||||||||||||    
T  37436615 actggagcactcctctaaggtacttg 37436590  T

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Target: chr5; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 37640880 - 37640755
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    ||||||||||||||  |||||||| | | |||||||||||||||||||  | | |||||||||| |||| |  |||||| |||  ||||||||| || ||    
T  37640880 ttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtcca 37640781  T
Q  214 actggagcactcctctaaggtacttg 239  Q
    ||||||||||||||||||||||||||    
T  37640780 actggagcactcctctaaggtacttg 37640755  T

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Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 37412452 - 37412504
Alignment:
Q  100 tagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacct 152  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37412452 tagggaacactagtttgcaaggaaatttagcaagtgacattccctctttacct 37412504  T

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Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 37392113 - 37392237
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    ||||||||||||||  |||||| | | | |||||||||||||||||||  |||||||||||||   ||| | || ||||  || ||||||||||  |  |    
T  37392113 ttgcaaggaaatttgtcaagtgccatcctctctttacctaatcttcaaagactagatttgtca---aataatgaacttagcggtaaacttccaaaatcaa 37392209  T
Q  214 actggagcactcctctaaggtacttgga 241  Q
    ||||||||||||||||||||||||||||    
T  37392210 actggagcactcctctaaggtacttgga 37392237  T

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Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 249
Target Start/End: Complemental strand, 37703676 - 37703541
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    ||||||||||||||  |||||||| | | |||||||||||||||||||  | | ||||||||||  ||| |  |||||| |||  |||||||||  | ||    
T  37703676 ttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcattcaattataaccttagtggtcaacttccaaaatcca 37703577  T
Q  214 actggagcactcctctaaggtacttggatctctctt 249  Q
    |||||||| |||||||||| |||||| | |||||||    
T  37703576 actggagctctcctctaagatacttgaacctctctt 37703541  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 37381487 - 37381555
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaat 182  Q
    ||||||||||||||  |||||||| | | ||||||||||||||| |||  ||||||||| |||||||||    
T  37381487 ttgcaaggaaatttgtcaagtgacatcctctctttacctaatctccaaacactagatttatcatctaat 37381555  T

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Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 114 - 250
Target Start/End: Original strand, 24216892 - 24217028
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    |||||||||||| |  |||||||| | | ||||||||| ||||||||| |||||||||||||||| ||| | ||||||  ||| ||| |||||| || ||    
T  24216892 ttgcaaggaaatatgtcaagtgacatcctctctttaccaaatcttcaaaaactagatttgtcatcgaatcaagaccttcgtggtaaatttccaacgtcca 24216991  T
Q  214 actggagcactcctctaaggtacttggatctctcttt 250  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  24216992 actggagcactcccctaaggtacttggacctctcttt 24217028  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 248
Target Start/End: Original strand, 16842019 - 16842162
Alignment:
Q  105 aacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttc 204  Q
    |||||| ||||||||||||||||   ||||||| | | ||||||  | |||||||||  |||||||||||||  |||| | ||||||| |||  ||||||    
T  16842019 aacactggtttgcaaggaaatttgttaagtgacatactctctttgtcaaatcttcaaagactagatttgtcacataatcaagaccttagtggtcaacttc 16842118  T
Q  205 caatgttcaactggagcactcctctaaggtacttggatctctct 248  Q
    |||  | |||||||||||||||||||||||||||| | ||||||    
T  16842119 caaaatccaactggagcactcctctaaggtacttgtacctctct 16842162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 14554046 - 14553921
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    ||||||||||||||  |||||||| | | |||||| || ||||||||| |||||||||||  |  |||||| |  |||| |||  |||||||||  | ||    
T  14554046 ttgcaaggaaatttgtcaagtgacatactctctttgccaaatcttcaaaaactagatttggtaggtaatgatggtcttagtggtcaacttccaaaatcca 14553947  T
Q  214 actggagcactcctctaaggtacttg 239  Q
    ||||||| ||||||||||||||||||    
T  14553946 actggagtactcctctaaggtacttg 14553921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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