View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_low_34 (Length: 324)
Name: NF0802_low_34
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 12627025 - 12627165
Alignment:
| Q |
86 |
gacagacatggacagtagatatgacacggacacggacacagataataatgtgagaaaatggcataatattcggtctagttataggtgtcgtgttggtgtc |
185 |
Q |
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| T |
12627025 |
gacagacatggacaccagacatgacacggacaccgacacagataataatgtgagaaaatggcataatattcggtgtagttataggtgtcgttttggtgtc |
12627124 |
T |
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| Q |
186 |
ggtgtatcggagacaccgacgcgtgtctgacacccaaggac |
226 |
Q |
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| T |
12627125 |
ggtgtatcggagacaccgacgcatgtctgacacccaaggac |
12627165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 76
Target Start/End: Original strand, 12626897 - 12626928
Alignment:
| Q |
45 |
cagcaagtgttgtgcagaatataatatgaact |
76 |
Q |
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| T |
12626897 |
cagcaagtgttgtgcagaatataatatgaact |
12626928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 10230146 - 10230067
Alignment:
| Q |
106 |
atgacacggacacggacacagataataatgtgagaaaatggcataatattcggtctagttataggtgtcgtgttggtgtcgg |
187 |
Q |
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| T |
10230146 |
atgacacggacactgactcagataataatttgaggaaatgacata--attcagtgtaagtatagatgtcgtgttggtgtcgg |
10230067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 40747844 - 40747767
Alignment:
| Q |
108 |
gacacggacacggacacagataataatgtgagaaaatggcataatattcggtctagttataggtgtcgtgttggtgtcgg |
187 |
Q |
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||||| ||||| ||||| ||||||||| |||||||||| |||||| || | || ||||||||||| |||||||||||| |
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| T |
40747844 |
gacacagacaccgacacggataataatttgagaaaatgacataat--tcaatgtaattataggtgtcatgttggtgtcgg |
40747767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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