View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_low_36 (Length: 319)
Name: NF0802_low_36
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_36 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 34 - 319
Target Start/End: Original strand, 26983725 - 26984012
Alignment:
| Q |
34 |
attttctgtcatctctgcaacaatactaagatggtacgttattaagatagtattagagttcaatctttgagctttgactctttctgcgttgcattgtttg |
133 |
Q |
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| T |
26983725 |
attttctgtcatctctgcaacaatactaagatggtacgttattaagatagtattagagttcaatctttgagctttgactctttttgcgttgcattgtttg |
26983824 |
T |
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| Q |
134 |
catgaagtacataaattaaggacacgcttaaccacacatat--gggaattgaaatacgtgaattaagttcaactccatgtccgtgaaacctattaaagtt |
231 |
Q |
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| T |
26983825 |
catgaagtacataaattaagtacacgcttaaccacacatatatgggaattgaaatacgtgaattaagttcaactccatgtccgtgaaacctattaaagtt |
26983924 |
T |
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| Q |
232 |
caagttcatgtctgtgaaacctattttaaataggtgtttatgttcatgcaacatcaaaaaatgatccgtatgaaatttgtagaacaat |
319 |
Q |
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| T |
26983925 |
caagttcatgtctgtgaaacctattttaaataggtgtttatgttcctgccacatcaaaaaatgatccgtatgaaatttgtagaacaat |
26984012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 26998373 - 26998430
Alignment:
| Q |
253 |
tattttaaataggtgtttatgttcatgcaacatcaaaaaatgatccgtatgaaatttg |
310 |
Q |
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| T |
26998373 |
tattttaaataggtgtttatgttcctgccacatcaaaaaatgatacgtatgaaatttg |
26998430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 26983146 - 26983064
Alignment:
| Q |
132 |
tgcatgaagtacataaattaaggacacgcttaaccacacatatgggaattgaaatacgtgaattaagttcaactccatgtccgtgaaacctatt |
225 |
Q |
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| T |
26983146 |
tgcatgaagtacataaattaagttcacgcttaaccacac--atgagaattgaaatac---------gttcaactccatgtccgtgaaacctatt |
26983064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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