View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_low_38 (Length: 306)
Name: NF0802_low_38
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 50050006 - 50049732
Alignment:
| Q |
1 |
ttgaggagttgaatccattagttattaagtcaaacaaaaatccattagtgtattttcaaaaaggnnnnnnnnnntgatatagtcgcttgtgtagttgacg |
100 |
Q |
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| T |
50050006 |
ttgaggagttgaatccat-agttattaagtcaaacaaaaatccattagtgtattttcaaaaag-aaaaaaaaaatgatacagtcgcttgtgtagttgacg |
50049909 |
T |
|
| Q |
101 |
aaacaagttgagaggaaaatgacttgaagtatgaccttgtgttttaagttttcctccatgcttgctaacaaatcactggatcaacaacatatctatcatc |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50049908 |
aaacaagttgagaggaaaatgacttaaagtatgaccttgtgttttaatttttcctccatgcttgctgacaaatcactggatcaacaacatatctatcatc |
50049809 |
T |
|
| Q |
201 |
taaatatatattaagttatcactatacatgattatgccattattactagtatataagagtatgtcaaagctccttgc |
277 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50049808 |
taaatatatattaagttatctctatacatgattatgccattattactagtatataagagtatgtcaaagctccttgc |
50049732 |
T |
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