View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_low_4 (Length: 680)
Name: NF0802_low_4
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 158 - 668
Target Start/End: Original strand, 35866030 - 35866540
Alignment:
| Q |
158 |
acagtcatagctttttgtgagaaagaattacactcatagtttaagtgtaaaagttacagtgtctactctgcagtttagaagaacattcaacatttacctt |
257 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35866030 |
acagtcatagctttttgcgagaaagaattacagtcatagtttaagtgtaaaagttacagtgtctactctgcagtttagaagaacattcaacatttacctt |
35866129 |
T |
|
| Q |
258 |
ctaaatctcaattgtttcataagctcacttatttaactattccacaaacatttgtaagttctaaagaacctaaaatatttaaataaaaagatcttaatag |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35866130 |
ctaaatctcaattgtttcataagctcacttatttaactattccacaaacatttgtaagttctaaagaacctaacatatttaaataaaaagatcttaatag |
35866229 |
T |
|
| Q |
358 |
tataaccatttggtttgtgatttttggttcgtgacatgatatcagagtctctatatccatgtggtttatgtctcattgagtttgcggtcctacagatgat |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35866230 |
tataaccatttggtttgtgatttttggttcgtgacatgatatcaaagtctctatatccatgtggtttatgtctcattgagtgtgcggtcctacagatgat |
35866329 |
T |
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| Q |
458 |
tcttgacgagatgatttagcggcccctcttatcattctttatttcagattaagctttatttagtttatgtgtcattgaccaaagcctttttgttaggttt |
557 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35866330 |
tcttgacgagatggcttagcggcccctcttatcattctttatttcagattaagctttatttagttaatgtgtcattgaccaaagcctttttgttaggttt |
35866429 |
T |
|
| Q |
558 |
attttgttcctaaattaggaatgcatgccttttcaactgttgattttattgttgatagtgaattatcatttttgcaggtctgtaaagccaaatatgaaga |
657 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35866430 |
attttgttcctaaattaggaatgcatgccttttcaactgttgattttattgttgatagtgaattatcatttttgcaggtctgtaaagccaaatatgaaga |
35866529 |
T |
|
| Q |
658 |
attgcaacagc |
668 |
Q |
| |
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||||||||||| |
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| T |
35866530 |
attgcaacagc |
35866540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 35865859 - 35865989
Alignment:
| Q |
28 |
catggagttcctaaaacacatgctcgtgttctgtaaaatactaaaatatatatattaaggggctaaatatttttcattcattttcaaatgggaagttgaa |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35865859 |
catggagttcctaaaacacatgctcgtgttctgtaaaatactaaaatatatatattaaggggctaaatatttttcattcattttcaaatgggaagttgaa |
35865958 |
T |
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| Q |
128 |
atacttttaattgaatttgttgatgtactta |
158 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
35865959 |
atacttttaattgaatttgttgatgtactta |
35865989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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