View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0802_low_41 (Length: 289)

Name: NF0802_low_41
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0802_low_41
NF0802_low_41
[»] chr3 (13 HSPs)
chr3 (30-153)||(38394011-38394134)
chr3 (198-289)||(38394179-38394270)
chr3 (229-289)||(47219155-47219216)
chr3 (211-264)||(54237485-54237538)
chr3 (229-264)||(3755607-3755642)
chr3 (212-289)||(25294971-25295049)
chr3 (222-264)||(29127956-29127998)
chr3 (212-289)||(29135924-29136002)
chr3 (229-289)||(6462423-6462484)
chr3 (211-264)||(49021220-49021273)
chr3 (229-289)||(53649738-53649799)
chr3 (222-289)||(28572239-28572307)
chr3 (229-276)||(54261250-54261298)
[»] chr4 (21 HSPs)
chr4 (200-289)||(43468363-43468453)
chr4 (222-289)||(5472875-5472943)
chr4 (232-289)||(38075449-38075507)
chr4 (229-289)||(31588700-31588763)
chr4 (229-289)||(40780895-40780956)
chr4 (230-289)||(26237457-26237517)
chr4 (222-289)||(38166043-38166111)
chr4 (222-276)||(7246673-7246728)
chr4 (211-289)||(29588752-29588831)
chr4 (229-289)||(1446842-1446903)
chr4 (229-266)||(8889062-8889099)
chr4 (223-264)||(14077988-14078029)
chr4 (229-289)||(29895803-29895864)
chr4 (229-289)||(36145249-36145310)
chr4 (211-252)||(50485997-50486038)
chr4 (222-289)||(1940804-1940869)
chr4 (224-264)||(12703574-12703614)
chr4 (229-276)||(17080072-17080120)
chr4 (222-289)||(24166466-24166534)
chr4 (229-276)||(42722611-42722659)
chr4 (222-289)||(48317302-48317370)
[»] scaffold0223 (1 HSPs)
scaffold0223 (229-288)||(16894-16954)
[»] chr1 (12 HSPs)
chr1 (211-283)||(33004032-33004105)
chr1 (229-264)||(45726468-45726503)
chr1 (229-289)||(49078126-49078187)
chr1 (222-281)||(28324608-28324668)
chr1 (222-288)||(43959849-43959916)
chr1 (221-283)||(48798097-48798160)
chr1 (229-289)||(12744558-12744619)
chr1 (229-289)||(12755548-12755609)
chr1 (229-289)||(17092512-17092573)
chr1 (211-264)||(26325850-26325903)
chr1 (229-289)||(31576582-31576643)
chr1 (229-289)||(33498874-33498935)
[»] chr7 (9 HSPs)
chr7 (222-289)||(38578894-38578962)
chr7 (211-264)||(365180-365233)
chr7 (229-289)||(1797474-1797535)
chr7 (228-289)||(43862005-43862067)
chr7 (211-264)||(16802163-16802216)
chr7 (221-289)||(34659240-34659309)
chr7 (211-264)||(48804723-48804776)
chr7 (229-288)||(13095873-13095933)
chr7 (211-263)||(24983435-24983487)
[»] chr2 (16 HSPs)
chr2 (229-289)||(10046511-10046571)
chr2 (223-264)||(2550905-2550946)
chr2 (229-289)||(10026650-10026711)
chr2 (229-289)||(22593146-22593206)
chr2 (222-289)||(34722691-34722759)
chr2 (229-264)||(14169643-14169678)
chr2 (211-289)||(44139495-44139574)
chr2 (198-264)||(6358154-6358220)
chr2 (211-283)||(12455327-12455400)
chr2 (223-264)||(13026439-13026480)
chr2 (222-289)||(331512-331580)
chr2 (222-289)||(10823071-10823139)
chr2 (198-289)||(27725951-27726043)
chr2 (222-281)||(28525482-28525542)
chr2 (222-289)||(38005413-38005481)
chr2 (222-289)||(41031933-41032001)
[»] chr5 (6 HSPs)
chr5 (229-289)||(9805016-9805077)
chr5 (229-289)||(7308398-7308459)
chr5 (229-289)||(19572736-19572797)
chr5 (229-289)||(42086339-42086400)
chr5 (200-280)||(42861223-42861304)
chr5 (232-283)||(40117433-40117485)
[»] scaffold0010 (1 HSPs)
scaffold0010 (222-289)||(155738-155806)
[»] chr6 (6 HSPs)
chr6 (222-289)||(8932676-8932744)
chr6 (222-289)||(8944142-8944210)
chr6 (223-289)||(12635829-12635896)
chr6 (229-289)||(21898663-21898724)
chr6 (230-282)||(29444800-29444853)
chr6 (222-289)||(5253250-5253318)
[»] scaffold0005 (1 HSPs)
scaffold0005 (224-289)||(271103-271169)
[»] chr8 (4 HSPs)
chr8 (200-289)||(43032916-43033006)
chr8 (229-289)||(18374025-18374086)
chr8 (210-289)||(6042836-6042916)
chr8 (229-276)||(10927634-10927682)
[»] scaffold0291 (1 HSPs)
scaffold0291 (229-289)||(6869-6930)
[»] scaffold0006 (1 HSPs)
scaffold0006 (222-289)||(68531-68596)
[»] scaffold0001 (1 HSPs)
scaffold0001 (229-276)||(65186-65234)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 38394011 - 38394134
Alignment:
Q  30 atttccactaacaccacaaactagaacttcattatgggcggcataaaccactatgaaatttatgcaaacacctggtttgcatcgtccgactgtaaattag 129  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38394011 atttccactgccaccacaaactagaacttcattatgggcggcataaaccactatgaaatttatgcaaacacctggtttgcatcgtccgactgtaaattag 38394110  T
Q  130 ccttgatagctactcgaaatgcag 153  Q
    ||||||||||||||| ||||||||    
T  38394111 ccttgatagctactccaaatgcag 38394134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 198 - 289
Target Start/End: Original strand, 38394179 - 38394270
Alignment:
Q  198 cacaccggtctatgacccactactggtgggtgactaatccggctcatgcgtagagacatacgcactgccgagcgttgtttcccctgagaatc 289  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38394179 cacaccggtctctgacccaccactggtgggtgactaatccggctcatgcgtagaaacatacgcactgccgagcgttgtttcccctgagaatc 38394270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 47219216 - 47219155
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| ||| |||||| ||| ||||||||||||| || |||||    
T  47219216 gactaatccggctcatgcgtagaggcatgcgcactagccaagcgttgtttcccttgggaatc 47219155  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 54237538 - 54237485
Alignment:
Q  211 gacccactactggtgggtgactaatccggctcatgcgtagagacatacgcactg 264  Q
    ||||||||| ||||||  |||| ||||||||||||||||||||||| |||||||    
T  54237538 gacccactaatggtggacgacttatccggctcatgcgtagagacatgcgcactg 54237485  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 3755642 - 3755607
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcactg 264  Q
    |||||||||||||||||||||||||||| |||||||    
T  3755642 gactaatccggctcatgcgtagagacatgcgcactg 3755607  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 25295049 - 25294971
Alignment:
Q  212 acccactactggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||| | ||||||  |||||||||||||||||| ||||| ||| |||||| ||| || ||||||||||| |||||||    
T  25295049 acccaccaatggtggacgactaatccggctcatgcatagaggcatgcgcactggccaagtgttgtttccccagagaatc 25294971  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 29127998 - 29127956
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcactg 264  Q
    |||||| |||||||||||||||||||||||| ||| |||||||    
T  29127998 ggtgggcgactaatccggctcatgcgtagaggcatgcgcactg 29127956  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 29136002 - 29135924
Alignment:
Q  212 acccactactggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||| | ||||||  |||||||||||||||||||||||| ||| |||||| ||| || |||||| |||||| |||||    
T  29136002 acccaccaatggtggaagactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatc 29135924  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 6462484 - 6462423
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| ||| |||||| ||| |||||||||  ||||| |||||    
T  6462484 gactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttctccctgtgaatc 6462423  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 49021220 - 49021273
Alignment:
Q  211 gacccactactggtgggtgactaatccggctcatgcgtagagacatacgcactg 264  Q
    ||||||| | ||||||  |||||||||||||||||||||||| ||| |||||||    
T  49021220 gacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactg 49021273  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 53649799 - 53649738
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||||||  |||||| ||| || ||||||  |||||||||||    
T  53649799 gactaatccggctcatgcgtagagacaggcgcactggccaagtgttgttcaccctgagaatc 53649738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 28572239 - 28572307
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||| |||||||||||||| ||||||||| ||| |  ||| ||| |||||||||||||||| |||||    
T  28572239 ggtgggcgactaatccggctcgtgcgtagaggcatgcatactggccaagcgttgtttcccctgggaatc 28572307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 54261298 - 54261250
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtt 276  Q
    |||||||||||||||||||||||| ||| |||||| ||| |||||||||    
T  54261298 gactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 54261250  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 43468453 - 43468363
Alignment:
Q  200 caccggtctatgacccactactggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||||  ||||||| ||||||||| ||||||||||||||||||||||||| ||  ||||| ||| ||||||||| |||||| |||||    
T  43468453 caccggtctccgacccaccactggtgggcgactaatccggctcatgcgtagagaaatgtgcactggccaagcgttgttccccctgggaatc 43468363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 5472875 - 5472943
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||| |||||||||||||| ||||||||| ||| |||||| ||| ||||||||||||||||||||||    
T  5472875 ggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtttcccctgagaatc 5472943  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 38075507 - 38075449
Alignment:
Q  232 taatccggctcatgcgtagagacatacgcactg-ccgagcgttgtttcccctgagaatc 289  Q
    |||| |||||||||||||||| ||| ||||||| || ||||||||||||||||||||||    
T  38075507 taattcggctcatgcgtagaggcatgcgcactggccaagcgttgtttcccctgagaatc 38075449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 31588763 - 31588700
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcactgcc---gagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||||||| ||||||| |   ||||||||||||| ||| |||||    
T  31588763 gactaatccggctcatgcgtagagacatgcgcactggccaagagcgttgtttcctctgggaatc 31588700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 40780895 - 40780956
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcactg-ccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| ||| ||||||| || ||||||||| ||| ||||||||    
T  40780895 gactaatccggctcatgcgtagaggcatgcgcactgaccaagcgttgttccccttgagaatc 40780956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 26237457 - 26237517
Alignment:
Q  230 actaatccggctcatgcgtagagacatacgcactg-ccgagcgttgtttcccctgagaatc 289  Q
    ||||||||| |||||||||| ||||||||||||||  | | ||||||||||||||||||||    
T  26237457 actaatccgactcatgcgtaaagacatacgcactgatcaaacgttgtttcccctgagaatc 26237517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 38166111 - 38166043
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||| |||||||||||||| ||||||||| ||| |||||| ||| ||||||||| |||||| |||||    
T  38166111 ggtgggcgactaatccggctcgtgcgtagagccatgcgcactggccaagcgttgttccccctgggaatc 38166043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 7246673 - 7246728
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtt 276  Q
    |||||| |||||||||||||||||||||||| ||| |||||| ||| |||||||||    
T  7246673 ggtgggcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 7246728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 29588831 - 29588752
Alignment:
Q  211 gacccactactggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    ||||||| | |||||| | ||||||||||||| ||||||||| ||| |||||| ||| ||| |||||||||||| |||||    
T  29588831 gacccaccaatggtggataactaatccggctcgtgcgtagaggcatgcgcactagccaagctttgtttcccctgggaatc 29588752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 1446903 - 1446842
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| ||| |||||| ||| || |||||| |||||| |||||    
T  1446903 gactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatc 1446842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 8889099 - 8889062
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcactgcc 266  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  8889099 gactaatccggctcatgcgtagagccatgcgcactgcc 8889062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 14078029 - 14077988
Alignment:
Q  223 gtgggtgactaatccggctcatgcgtagagacatacgcactg 264  Q
    |||||||||||||||| ||| ||||||||||||| |||||||    
T  14078029 gtgggtgactaatccgactcgtgcgtagagacatgcgcactg 14077988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 29895864 - 29895803
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| ||| |||||| ||| || |||||| |||||| |||||    
T  29895864 gactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatc 29895803  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 36145249 - 36145310
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcactg-ccgagcgttgtttcccctgagaatc 289  Q
    ||||||||||||||||| |||||| ||| |||||||  | |||||||||||||||| |||||    
T  36145249 gactaatccggctcatgtgtagaggcatgcgcactgatcaagcgttgtttcccctgggaatc 36145310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 50486038 - 50485997
Alignment:
Q  211 gacccactactggtgggtgactaatccggctcatgcgtagag 252  Q
    ||||||||| ||||||| |||||||||||||| |||||||||    
T  50486038 gacccactaatggtgggcgactaatccggctcgtgcgtagag 50485997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 1940804 - 1940869
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcactgccgagcgttgtttcccctgagaatc 289  Q
    |||||| |||||||||||||| ||||||||| ||| |||||  || ||||||||| |||||| |||||    
T  1940804 ggtgggcgactaatccggctcgtgcgtagaggcatgcgcac--ccaagcgttgttccccctgggaatc 1940869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 12703574 - 12703614
Alignment:
Q  224 tgggtgactaatccggctcatgcgtagagacatacgcactg 264  Q
    |||| ||||||||||||| |||||||||||||||| |||||    
T  12703574 tgggcgactaatccggcttatgcgtagagacatacacactg 12703614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 17080120 - 17080072
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtt 276  Q
    |||||||||||||||||||||||| ||| |||||| ||| |||||||||    
T  17080120 gactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 17080072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 24166534 - 24166466
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    ||||||||||||||| ||||| ||||||||| ||| |||||| ||| | ||||||||||| || |||||    
T  24166534 ggtgggtgactaatctggctcgtgcgtagaggcatgcgcactggccaaacgttgtttcccttgggaatc 24166466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 42722611 - 42722659
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtt 276  Q
    |||||||||||||||||||||||| ||| |||||| ||| |||||||||    
T  42722611 gactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 42722659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 48317302 - 48317370
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcactg-ccgagcgttgtttcccctgagaatc 289  Q
    |||||| |||||||||||||| ||||||||| ||||| ||||| || ||||||||| | ||||| ||||    
T  48317302 ggtgggcgactaatccggctcgtgcgtagaggcatacacactgaccaagcgttgttcctcctgaaaatc 48317370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 288
Target Start/End: Complemental strand, 16954 - 16894
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcactg-ccgagcgttgtttcccctgagaat 288  Q
    |||||||| ||||| ||||||||||||||||||||| || |||||||||||||||||||||    
T  16954 gactaatctggctcgtgcgtagagacatacgcactgaccaagcgttgtttcccctgagaat 16894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 283
Target Start/End: Original strand, 33004032 - 33004105
Alignment:
Q  211 gacccactactggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctg 283  Q
    ||||||| | |||||||||||||||||||||| ||||||||| ||| |||||| ||| ||| ||||||||||||    
T  33004032 gacccaccattggtgggtgactaatccggctcgtgcgtagaggcatgcgcactggccaagcattgtttcccctg 33004105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 264
Target Start/End: Original strand, 45726468 - 45726503
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcactg 264  Q
    ||||||||||||||||||||||||||||||||||||    
T  45726468 gactaatccggctcatgcgtagagacatacgcactg 45726503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 49078187 - 49078126
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| ||| |||||| ||| || ||||||||||||| |||||    
T  49078187 gactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtttcccctgggaatc 49078126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 28324608 - 28324668
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcactg-ccgagcgttgtttcccc 281  Q
    |||| |||||||||||||||||||||||||| ||| ||||||| || || |||||||||||    
T  28324608 ggtgagtgactaatccggctcatgcgtagaggcatgcgcactgaccaagtgttgtttcccc 28324668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 43959849 - 43959916
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaat 288  Q
    |||||| |||||||||||||| ||||||||| ||| |||||| ||| ||||||||| |||||| ||||    
T  43959849 ggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctgggaat 43959916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 48798097 - 48798160
Alignment:
Q  221 tggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctg 283  Q
    |||| ||||||||||||||||||||||||||| ||| |||||| | | ||||||||| ||||||    
T  48798097 tggtaggtgactaatccggctcatgcgtagaggcatgcgcactagtcaagcgttgttccccctg 48798160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 12744558 - 12744619
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    ||||||| |||||||||||||||||||| |||||| | | ||||||||| ||||||| ||||    
T  12744558 gactaattcggctcatgcgtagagacatgcgcactagtcaagcgttgttccccctgaaaatc 12744619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 12755548 - 12755609
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    ||||||| |||||||||||||||||||| |||||| | | ||||||||| ||||||| ||||    
T  12755548 gactaattcggctcatgcgtagagacatgcgcactagtcaagcgttgttccccctgaaaatc 12755609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 17092512 - 17092573
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||| ||||||||| ||||| |||| ||| | ||||||||||||||| ||||    
T  17092512 gactaatccggctcgtgcgtagaggcatacacactggccaatcgttgtttcccctgaaaatc 17092573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 26325903 - 26325850
Alignment:
Q  211 gacccactactggtgggtgactaatccggctcatgcgtagagacatacgcactg 264  Q
    ||||||| | ||||||  |||||||||||||||||||||||| ||| |||||||    
T  26325903 gacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactg 26325850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 31576582 - 31576643
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||| ||||||||||||||||| || ||||| | ||| ||| ||||||||||||||||||    
T  31576582 gactaagccggctcatgcgtagaggcacacgcattggccaagcattgtttcccctgagaatc 31576643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 33498874 - 33498935
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| ||| |||||| ||| ||||||| | | ||||||||||    
T  33498874 gactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgctcctcctgagaatc 33498935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 38578894 - 38578962
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||||| |||||| |||||    
T  38578894 ggtgggcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctgggaatc 38578962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 365233 - 365180
Alignment:
Q  211 gacccactactggtgggtgactaatccggctcatgcgtagagacatacgcactg 264  Q
    ||||||| |||||||||| ||||||| ||||||||||||||| ||| |||||||    
T  365233 gacccaccactggtgggtcactaatcaggctcatgcgtagaggcatgcgcactg 365180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 1797535 - 1797474
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    ||||| |||||||| ||||||||||||| |||||| ||| |||||||||||||||| |||||    
T  1797535 gactagtccggctcgtgcgtagagacatgcgcactggccaagcgttgtttcccctgggaatc 1797474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 43862005 - 43862067
Alignment:
Q  228 tgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    ||||||||||||||||||||||||| ||| |||||| ||| | ||||||| |||||| |||||    
T  43862005 tgactaatccggctcatgcgtagaggcatgcgcactggccaaacgttgttccccctgggaatc 43862067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 16802216 - 16802163
Alignment:
Q  211 gacccactactggtgggtgactaatccggctcatgcgtagagacatacgcactg 264  Q
    ||||||| | ||||| | |||||||||||||| ||||||||| |||||||||||    
T  16802216 gacccaccaatggtgagcgactaatccggctcgtgcgtagaggcatacgcactg 16802163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 34659309 - 34659240
Alignment:
Q  221 tggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    ||||||| |||||||||||||| ||||||||| ||| |||||| | | ||||||||| ||| ||||||||    
T  34659309 tggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggtcaagcgttgttccccttgagaatc 34659240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 48804776 - 48804723
Alignment:
Q  211 gacccactactggtgggtgactaatccggctcatgcgtagagacatacgcactg 264  Q
    ||||||| | ||||||  |||||||||||||||||||||||| ||| |||||||    
T  48804776 gacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactg 48804723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 288
Target Start/End: Complemental strand, 13095933 - 13095873
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaat 288  Q
    |||||||||||||||||||||||| ||| |||||| ||| || |||||| |||||| ||||    
T  13095933 gactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaat 13095873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 24983435 - 24983487
Alignment:
Q  211 gacccactactggtgggtgactaatccggctcatgcgtagagacatacgcact 263  Q
    ||||||| | ||||||  |||||||||||||||||||||||| ||| ||||||    
T  24983435 gacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcact 24983487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 10046511 - 10046571
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcactgccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||||||||| ||||||||    
T  10046511 gactaatccggctcatgcgtagaggcatgcgcactgtcaaacgttgtttcccttgagaatc 10046571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 2550946 - 2550905
Alignment:
Q  223 gtgggtgactaatccggctcatgcgtagagacatacgcactg 264  Q
    ||||| |||||||||||||||||||||||||||| |||||||    
T  2550946 gtgggcgactaatccggctcatgcgtagagacatgcgcactg 2550905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 10026650 - 10026711
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| ||| |||||| ||| | ||||||| ||||||||||||    
T  10026650 gactaatccggctcatgcgtagaggcatgcgcactggccaaacgttgttccccctgagaatc 10026711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 22593206 - 22593146
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcactgccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||||| |||||| |||||    
T  22593206 gactaatccggctcatgcgtagaggcatgcgcactggccaacgttgttccccctgggaatc 22593146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 34722759 - 34722691
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcactg-ccgagcgttgtttcccctgagaatc 289  Q
    |||||| |||||||||||||| |||||||||||||  |||||| || |||||||||  |||||||||||    
T  34722759 ggtgggcgactaatccggctcgtgcgtagagacatgtgcactgaccaagcgttgttctccctgagaatc 34722691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 264
Target Start/End: Original strand, 14169643 - 14169678
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcactg 264  Q
    |||||||||||||||||||||||||||| |||||||    
T  14169643 gactaatccggctcatgcgtagagacatgcgcactg 14169678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 44139574 - 44139495
Alignment:
Q  211 gacccactactggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    ||||||| | ||||||| |||||||||||||| ||||||||| ||  |||||| ||| ||||||||| |||||| |||||    
T  44139574 gacccaccattggtgggcgactaatccggctcgtgcgtagaggcacgcgcactggccaagcgttgttccccctgggaatc 44139495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 6358154 - 6358220
Alignment:
Q  198 cacaccggtctatgacccactactggtgggtgactaatccggctcatgcgtagagacatacgcactg 264  Q
    ||||||||| |  ||||||| | ||||||  |||||||||||||||||||||||| ||| |||||||    
T  6358154 cacaccggttttcgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactg 6358220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 283
Target Start/End: Complemental strand, 12455400 - 12455327
Alignment:
Q  211 gacccactactggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctg 283  Q
    ||||||| | ||||| | |||||||||||||| ||||||||| ||| |||||| ||  ||||||||||||||||    
T  12455400 gacccaccaatggtgagcgactaatccggctcgtgcgtagaggcatgcgcactggctaagcgttgtttcccctg 12455327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 13026439 - 13026480
Alignment:
Q  223 gtgggtgactaatccggctcatgcgtagagacatacgcactg 264  Q
    |||| ||||||||||||||||||||||||| ||| |||||||    
T  13026439 gtggctgactaatccggctcatgcgtagaggcatgcgcactg 13026480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 331580 - 331512
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||| |||||||||||||||||||||||  ||| |||||| ||| || |||||| |||||| |||||    
T  331580 ggtgggcgactaatccggctcatgcgtagaagcatgcgcactggccaagtgttgttccccctgggaatc 331512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 10823139 - 10823071
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||| |||||||||||||| ||||||||| ||| |||||| ||| ||||||||| | |||| |||||    
T  10823139 ggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatc 10823071  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 27726043 - 27725951
Alignment:
Q  198 cacaccggtctatgacccactactggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    ||||||||| |  ||||||| | ||||||| |||||||||||||  ||||||||| ||| |||||| ||| ||| ||||| | ||||||||||    
T  27726043 cacaccggtttccgacccaccattggtgggcgactaatccggctagtgcgtagaggcatgcgcactggccaagcattgttcctcctgagaatc 27725951  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 28525482 - 28525542
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccc 281  Q
    ||||| ||||||||||||||| ||||||||| ||| |||||| ||| || |||||||||||    
T  28525482 ggtggatgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgtttcccc 28525542  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 38005481 - 38005413
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||| ||||||||||||||||| |||||| ||| |||||| ||| ||||||||| ||| || |||||    
T  38005481 ggtgggcgactaatccggctcatgtgtagaggcatgcgcactggccaagcgttgttccccttgggaatc 38005413  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 41031933 - 41032001
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    ||||||||||||||||||||| ||||||||| ||| | |||| ||| || |||||| |||||| |||||    
T  41031933 ggtgggtgactaatccggctcgtgcgtagaggcatgcacactggccaagtgttgttccccctgggaatc 41032001  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 9805077 - 9805016
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| ||| |||||| ||| ||||||||| |||||| |||||    
T  9805077 gactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctgggaatc 9805016  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 7308398 - 7308459
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcactg-ccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| |||  |||||| || ||||||||| |||||| |||||    
T  7308398 gactaatccggctcatgcgtagaggcatgtgcactgcccaagcgttgttccccctgggaatc 7308459  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 19572797 - 19572736
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| ||| |||||| ||| || |||||| |||||| |||||    
T  19572797 gactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatc 19572736  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 42086400 - 42086339
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| ||| |||||| | | ||||||||| |||||| |||||    
T  42086400 gactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgggaatc 42086339  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 42861223 - 42861304
Alignment:
Q  200 caccggtctatgacccactactggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttccc 280  Q
    |||||||||  ||||||| | ||||||  || ||||||||||||||||||||| ||| |||||| ||| || ||||||||||    
T  42861223 caccggtctccgacccaccaatggtggacgattaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtttccc 42861304  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 40117485 - 40117433
Alignment:
Q  232 taatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctg 283  Q
    ||||||||||||||||||||| ||| |||||| ||| ||||||||| ||||||    
T  40117485 taatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctg 40117433  T

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Target: scaffold0010 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 155738 - 155806
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||| |||||||||||||| ||||||||| ||| |||||| ||| ||||||||| |||||| |||||    
T  155738 ggtgggcgactaatccggctcgtgcgtagaggcatgcgcactagccaagcgttgttccccctgggaatc 155806  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 8932744 - 8932676
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    ||||||||| ||||||||||||||||||||| ||| |||||| ||| || |||||| |||||| |||||    
T  8932744 ggtgggtgattaatccggctcatgcgtagaggcatgcgcactagccaagtgttgttccccctgggaatc 8932676  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 8944210 - 8944142
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    ||||||||| ||||||||||||||||||||| ||| |||||| ||| || |||||| |||||| |||||    
T  8944210 ggtgggtgattaatccggctcatgcgtagaggcatgcgcactagccaagtgttgttccccctgggaatc 8944142  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 12635896 - 12635829
Alignment:
Q  223 gtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    ||||| |||||||||||||  ||||||||| ||| |||||| ||| |||||||||||||||| |||||    
T  12635896 gtgggcgactaatccggcttgtgcgtagaggcatgcgcactagccaagcgttgtttcccctgggaatc 12635829  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 21898724 - 21898663
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| ||| |||||| ||| ||||||||| | |||| |||||    
T  21898724 gactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatc 21898663  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 29444800 - 29444853
Alignment:
Q  230 actaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccct 282  Q
    ||||||||||||||||||||||| ||| |||||| ||| ||||||||| |||||    
T  29444800 actaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccct 29444853  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 5253250 - 5253318
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||| || ||||||||||||||||||||| ||| |||||| ||| || |||||| |||||| |||||    
T  5253250 ggtgggcgattaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatc 5253318  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 271103 - 271169
Alignment:
Q  224 tgggtgactaatccggctcatgcgtagagacatacgcactg-ccgagcgttgtttcccctgagaatc 289  Q
    |||| |||||| ||||||| ||||||||||||| ||||||| || ||||||||| |||||| |||||    
T  271103 tgggcgactaacccggctcgtgcgtagagacatgcgcactgaccaagcgttgttccccctgggaatc 271169  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 43033006 - 43032916
Alignment:
Q  200 caccggtctatgacccactactggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    ||||||| | |||||||| |  |||||| |||||||||||||| || |||||| ||| |||||| ||| ||||||||| |||||| |||||    
T  43033006 caccggtttctgacccaccaaaggtgggcgactaatccggctcgtgtgtagaggcatgcgcactggccaagcgttgttccccctgggaatc 43032916  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 18374086 - 18374025
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| ||| |||||| | | |||||||||  |||||||||||    
T  18374086 gactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttctccctgagaatc 18374025  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 6042916 - 6042836
Alignment:
Q  210 tgacccactactggtgggtgactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||| | ||||||| ||||||||||||||||||||  || ||| |||||| ||| ||||||||| ||| || |||||    
T  6042916 tgacccaccagtggtgggcgactaatccggctcatgcgtttaggcatgcgcactggccaagcgttgttccccttgggaatc 6042836  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 10927682 - 10927634
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtt 276  Q
    |||||||||||||||||||||||| ||| |||||| ||| |||||||||    
T  10927682 gactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 10927634  T

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Target: scaffold0291 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 6930 - 6869
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtttcccctgagaatc 289  Q
    |||||||||||||||||||||||| ||| |||||| ||| || |||||| |||||| |||||    
T  6930 gactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatc 6869  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 68596 - 68531
Alignment:
Q  222 ggtgggtgactaatccggctcatgcgtagagacatacgcactgccgagcgttgtttcccctgagaatc 289  Q
    |||||| |||||||||||||| ||||||||| ||| |||||  || ||||||||| |||||| |||||    
T  68596 ggtgggcgactaatccggctcgtgcgtagaggcatgcgcac--ccaagcgttgttccccctgggaatc 68531  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 65186 - 65234
Alignment:
Q  229 gactaatccggctcatgcgtagagacatacgcact-gccgagcgttgtt 276  Q
    ||||||||| |||||||||||||||||| |||||| ||| |||||||||    
T  65186 gactaatccagctcatgcgtagagacatgcgcactggccaagcgttgtt 65234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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