View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0802_low_44 (Length: 280)
Name: NF0802_low_44
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 106 - 252
Target Start/End: Complemental strand, 4846178 - 4846031
Alignment:
| Q |
106 |
gcaataattgacgggtgagtttaagttttctaaaaaa-gattgttattttacaacatgaaaaatcaatgttcaaatctcaattaagagagatgtcagtac |
204 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4846178 |
gcaattattgacgggtgagtttaagttttctaaaaaaagattgttattttacaacatgaaaaatcaatgttcaaatctcaattaagagagatgtcagtac |
4846079 |
T |
|
| Q |
205 |
tttctatttacaatatcttatatacgaataaaaattcaatggtcttac |
252 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
4846078 |
tttctatttacaatatcttatatacgaatcaaaaatcaatggtcttac |
4846031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 106 - 251
Target Start/End: Original strand, 5193096 - 5193244
Alignment:
| Q |
106 |
gcaataattgacgggtgagtttaagttttctaaaaaagattgttattttacaacatgaaaaatcaatgttcaaatctcaattaagagagatgtcagtact |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5193096 |
gcaataattgacgggtgagtttaagttttctaaaaaagattgttattttacaacatgaaaattcaatgttcaaatctcaattaagagagatgtcagtact |
5193195 |
T |
|
| Q |
206 |
ttctat---ttacaatatcttatatacgaataaaaattcaatggtctta |
251 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| |||||| ||||| |
|
|
| T |
5193196 |
ttctatttattacaatatcttatatacgaattaaaaatcaatgatctta |
5193244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 5167715 - 5167847
Alignment:
| Q |
106 |
gcaataattgacgggtgagtttaagttttctaaaaaagattgttattttacaacatgaaaaatcaatgttcaaatctcaattaagagagatgtcagtact |
205 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5167715 |
gcaataattgaccggtgagtttaagttttctaaataagattattattttacaacataaaaaatcaatgtacaaatctcaattaagagagatgtcagtact |
5167814 |
T |
|
| Q |
206 |
ttctatttacaatatcttatatacgaataaaaa |
238 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
5167815 |
ttctatttacaatatcttatatacgaatcaaaa |
5167847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 21 times since January 2019
Visitors: 5829