View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_low_50 (Length: 252)
Name: NF0802_low_50
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34515401 - 34515623
Alignment:
| Q |
1 |
agctctccttgtatccatgcacctagtaggagcaacaaagtcacataaagtgagtccttcaaaaaggagaaaagaattaaacaattgtaatttgttctct |
100 |
Q |
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| T |
34515401 |
agctctccttgtatccatgcacctagtaggagcaacaaagtcacataaagtgagtccttcaaaaaggagaaaagaattaaacaattgtaatttgttctct |
34515500 |
T |
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| Q |
101 |
ggtagttgggtgattggctcttcatatactctctatgattcttcaagctgccccttcttagaagctcaatttgattgccaaaaatttggaagacttgata |
200 |
Q |
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| T |
34515501 |
ggtagttgggtgattggctcttcatatactctctatgattcttcaagctgccccttcttagaagctcaatttgattgccaaaaatttggaagacttgata |
34515600 |
T |
|
| Q |
201 |
atcagtatcttaaatactcttgg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
34515601 |
atcagtatcttaaatactcttgg |
34515623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 34505649 - 34505789
Alignment:
| Q |
83 |
aattgtaatttgttctctggtagttgggtgattggctcttcatatactctctatgattcttcaagctgccccttcttagaagctcaatttgattgccaaa |
182 |
Q |
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|||||||||||||||| ||| || |||||||||| |||||||||| |||||||||||||||||||||| || ||| | |||||||| |||||||||||| |
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| T |
34505649 |
aattgtaatttgttctttggaagctgggtgattgactcttcatatcctctctatgattcttcaagctgtcctttcgttgaagctcagtttgattgccaac |
34505748 |
T |
|
| Q |
183 |
aatttggaagacttgataatcagtatcttaaatactcttgg |
223 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
34505749 |
aatttggaagacctgataatcagtatcttaaatactcttgg |
34505789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 4690758 - 4690642
Alignment:
| Q |
104 |
agttgggtgattggctcttcatatactctctatgattcttcaagctgccccttcttagaagctcaatttgattgccaaaaatttggaagacttgataatc |
203 |
Q |
| |
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||||||||| ||| | |||| ||| ||||||||||||| ||||||||||||| | || || ||||| |||| ||||| | |||||||| |||||| | |
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| T |
4690758 |
agttgggtggttgacccttcttatcctctctatgattc---aagctgccccttcattgatcctgaatttaattgtcaaaagtatggaagacctgataaac |
4690662 |
T |
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| Q |
204 |
agtatcttaaatactcttgg |
223 |
Q |
| |
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| || || |||||||||||| |
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| T |
4690661 |
aatacctcaaatactcttgg |
4690642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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