View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_low_51 (Length: 251)
Name: NF0802_low_51
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 35102904 - 35102665
Alignment:
| Q |
5 |
atttgaaaaggatggatttgagcaactccaagtttcttacagagactccaaagnnnnnnn---ccccaatacttgagcggctagattttaccggatgcac |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35102904 |
atttgaaaaggatggatttgagcaactccaagtttcttacagagactccaaagtttttctggaccccaatacttgagcggctagattttaccggatgcac |
35102805 |
T |
|
| Q |
102 |
aaacttaatacaagtccatccatcaattggacatcttacagaacttgttttcttaagtttgcaaaactgcagcagtttggtcaaccttgattttggaagt |
201 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | | |
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| T |
35102804 |
aaacttaatacaggttcatccatcaattggacatcttacagaacttgttttcttaagtttgcaaaactgcagcagtttggtcaacctcgattttggtatt |
35102705 |
T |
|
| Q |
202 |
gaatcaaatttaagttctttgagagttctacgcctctctg |
241 |
Q |
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| |||||||||| |||||||||||||||||||||||||| |
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| T |
35102704 |
gtatcaaatttatattctttgagagttctacgcctctctg |
35102665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 35042824 - 35042590
Alignment:
| Q |
5 |
atttgaaaaggatggatttgagcaactccaagtttcttacagagactccaaagnnnnnnn---ccccaatacttgagcggctagattttaccggatgcac |
101 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| ||||||||| ||||||||||| |||||||| |
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| T |
35042824 |
atttgaaaaggatggatttgagcaactccaagtatcttatagagactccaaagtttttttggaccccaaaacttgagcgactagattttacgggatgcac |
35042725 |
T |
|
| Q |
102 |
aaacttaatacaagtccatccatcaattggacatcttacagaacttgttttcttaagtttgcaaaactgcagcagtttggtcaaccttgattttggaagt |
201 |
Q |
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| T |
35042724 |
aaacttaatacatgtccattcatcaattggacatcttacagaacttgttttcttaagtttgcaaaactgcagcagtttggttgaccttgacttcggtagt |
35042625 |
T |
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| Q |
202 |
gaatcaaatttaagttctttgagagttctacgcct |
236 |
Q |
| |
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| T |
35042624 |
gtatcaaatttaagttctttccaagttctacgcct |
35042590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 195
Target Start/End: Original strand, 35128342 - 35128534
Alignment:
| Q |
6 |
tttgaaaaggatggatttgagcaactccaagtttcttacagagactccaaagnnnnnnn---ccccaatacttgagcggctagattttaccggatgcaca |
102 |
Q |
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|||||||||||||||||||| ||||||||||| ||||| ||||| |||| || |||||| |||| ||||| ||||||||| ||||||||| |
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| T |
35128342 |
tttgaaaaggatggatttgatcaactccaagtatcttatagagagtccatagtttttttttaccccaaaactttagcggttagattttattggatgcaca |
35128441 |
T |
|
| Q |
103 |
aacttaatacaagtccatccatcaattggacatcttacagaacttgttttcttaagtttgcaaaactgcagcagtttggtcaaccttgatttt |
195 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| |||| |||||| |
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| T |
35128442 |
aacttaatacaggtccatccagcaattggacatcttacagaacttgttttcttaaatttacaaaacagcagcagtttggtcgacctcgatttt |
35128534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 35095482 - 35095379
Alignment:
| Q |
138 |
tacagaacttgttttcttaagtttgcaaaactgcagcagtttggtcaaccttgattttggaagtgaatcaaatttaagttctttgagagttctacgcctc |
237 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| |
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| T |
35095482 |
tacaaaacttgttttcttaagtttgcaaaactgcagcagtttggtcaaccttgattttggtagtgtatcaaatttatgttctttgagagttctacgcctc |
35095383 |
T |
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| Q |
238 |
tctg |
241 |
Q |
| |
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|||| |
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|
| T |
35095382 |
tctg |
35095379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 25433230 - 25433104
Alignment:
| Q |
73 |
cttgagcggctagattttaccggatgcacaaacttaatacaagtccatccatcaattggacatcttacagaacttgttttcttaagtttgcaaaactgca |
172 |
Q |
| |
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|||||||| |||||| || | ||||||| ||||||| |||||| || |||||||||||| ||||||| ||||||| ||||| |||||||||||||| | |
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| T |
25433230 |
cttgagcgactagatctttcaggatgcataaacttatcacaagtggattcatcaattggacttcttacaaaacttgtattcttgagtttgcaaaactgta |
25433131 |
T |
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| Q |
173 |
gcagtttggtcaaccttgattttggaa |
199 |
Q |
| |
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| | | | || |||||||||||||||| |
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| T |
25433130 |
gaaatctagttaaccttgattttggaa |
25433104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 25475734 - 25475611
Alignment:
| Q |
76 |
gagcggctagattttaccggatgcacaaacttaatacaagtccatccatcaattggacatcttacagaacttgttttcttaagtttgcaaaactgcagca |
175 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||||| || || ||||||||||||||| |||||| |||||||| ||||| |||||||| ||||| || | |
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| T |
25475734 |
gagcggctagatcttacaggatgcataaacttatcgcatgtggatccatcaattggacttcttacggaacttgtattcttgagtttgcagaactgtagta |
25475635 |
T |
|
| Q |
176 |
gtttggtcaaccttgattttggaa |
199 |
Q |
| |
|
|| | || | |||||||||||||| |
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| T |
25475634 |
gtctagttagccttgattttggaa |
25475611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 25448213 - 25448310
Alignment:
| Q |
73 |
cttgagcggctagattttaccggatgcacaaacttaatacaagtccatccatcaattggacatcttacagaacttgttttcttaagtttgcaaaactg |
170 |
Q |
| |
|
||||||||||||||| |||| ||||||| |||||| ||| || ||||||||||||||| |||| ||||||||| ||||| |||||||||||||| |
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| T |
25448213 |
cttgagcggctagatcttacaggatgcattaacttatcacatgtggatccatcaattggacttcttgaagaacttgtattcttgagtttgcaaaactg |
25448310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 25488138 - 25488226
Alignment:
| Q |
73 |
cttgagcggctagattttaccggatgcacaaacttaatacaagtccatccatcaattggacatcttacagaacttgttttcttaagttt |
161 |
Q |
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|
|||||||||||||||||||| ||||||| ||||||| || || ||||||||||||||| |||||| |||||||| ||||| ||||| |
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| T |
25488138 |
cttgagcggctagattttacaggatgcataaacttatcgcatgtggatccatcaattggacttcttactgaacttgtattcttgagttt |
25488226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 496996 - 496899
Alignment:
| Q |
73 |
cttgagcggctagattttaccggatgcacaaacttaatacaagtccatccatcaattggacatcttacagaacttgttttcttaagtttgcaaaactg |
170 |
Q |
| |
|
||||||||| |||||||||| ||||||| |||||| | || || ||||||||| |||||| ||||||||||||||| ||||| |||||||| ||||| |
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| T |
496996 |
cttgagcggatagattttacaggatgcataaacttgttgcaggtgcatccatcagttggacttcttacagaacttgtattcttgagtttgcagaactg |
496899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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