View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_low_6 (Length: 624)
Name: NF0802_low_6
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 7351873 - 7352413
Alignment:
| Q |
1 |
agaagcatcacttggatggagaaacttggttattgaggtttgaatatcggagaga--tattgggaagtgatgatgaag---aaggttgaatgtttcccac |
95 |
Q |
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| T |
7351873 |
agaagcatcacttggatggagaaacttggttattgaggtttgaatatcggagagagatattgggaagtgatgatgaagaagaaggttgaatgtttcccac |
7351972 |
T |
|
| Q |
96 |
ccttcatttcggtccctatccaagtcacaattcaatttggtcgtctcattagcaccatgtcagcatttttgactgatttaatgcttttgttaacatcaag |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7351973 |
ccttcatttcggtccctatccaagtcacaattcaatttggtcgtctcattagcaccatgtcagcatttttgactgatttaatgcttttgttagcatcaag |
7352072 |
T |
|
| Q |
196 |
gaccaaaatgactaacaatgaagaatgagggatttaactaggtttttgtttgagtcaggagccaatacgacaatgtcttacactctcagtatcagggacc |
295 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7352073 |
gatcaaaatgactaacaatgaagaatgagggatttaactaggtttttgtttgagtcaggagccaatacgacaatgtcttacactctcagtctcagggacc |
7352172 |
T |
|
| Q |
296 |
aaaataatggtttgccctaatagtttttccttnnnnnnnntaaaataatacaaagaggccttcaatgccgtaaaaaactaagcttaattcaactttaaat |
395 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
7352173 |
aaaataatggtttgccctaatagtttttccttaaaa-----aaaataatacaaagaggccttcaatgccgtaaaaaactaagcttaattcaacttcagat |
7352267 |
T |
|
| Q |
396 |
ctcccaagtaatacaattatgcaattttagcttctcacttttaaattggacaattttgtttcctaatatttctccattgtccaatataccttgattcatt |
495 |
Q |
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| T |
7352268 |
ctcccaagtaatacaattatgcaattttagcttctcacttttaaattggacaattttgtttcctaatatttctccattgtccaatataccttgattcatt |
7352367 |
T |
|
| Q |
496 |
aatttatttttaatatttctctaattttggtcattcaatattcttg |
541 |
Q |
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|
| T |
7352368 |
aatttatttttgatatttctctaattttggtcattcaattttcttg |
7352413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 154 - 279
Target Start/End: Original strand, 19263677 - 19263803
Alignment:
| Q |
154 |
gtcagcatttttgactgatttaatgcttttgttaacatcaaggaccaaaatgactaac--aatgaagaatgagggatttaactaggtttttgtttgagtc |
251 |
Q |
| |
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|||| ||||||||| ||||||| | |||||||||| |||||||||||||||| |||| |||| |||||||||||||||| |||| |||||||||||| |
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| T |
19263677 |
gtcaacatttttgatcgatttaacgattttgttaacgtcaaggaccaaaatgattaacagaatgtagaatgagggatttaaatagg-ctttgtttgagtc |
19263775 |
T |
|
| Q |
252 |
aggagccaatacgacaatgtcttacact |
279 |
Q |
| |
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| | |||||| ||||| |||||||||| |
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|
| T |
19263776 |
acggaccaatatgacaacgtcttacact |
19263803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 31821479 - 31821588
Alignment:
| Q |
145 |
tagcaccatgtcagcatttttgactgatttaatgcttttgttaacatcaaggaccaaaatgactaaca--atgaagaatgagggatttaactaggttttt |
242 |
Q |
| |
|
|||||||| ||||||||||| | |||||||| | |||||||||| |||| | ||||||||| |||| |||||||||||| ||||||| | ||||||| |
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| T |
31821479 |
tagcaccacatcagcattttttattgatttaacggttttgttaacgtcaaaaatcaaaatgaccaacagaatgaagaatgagagatttaattgggttttt |
31821578 |
T |
|
| Q |
243 |
gtttgagtca |
252 |
Q |
| |
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|||||||||| |
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|
| T |
31821579 |
gtttgagtca |
31821588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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