View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0804_high_5 (Length: 331)

Name: NF0804_high_5
Description: NF0804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0804_high_5
NF0804_high_5
[»] chr4 (10 HSPs)
chr4 (84-318)||(35106979-35107214)
chr4 (119-318)||(35072682-35072881)
chr4 (119-314)||(35097805-35098000)
chr4 (119-314)||(35098094-35098289)
chr4 (120-315)||(36940478-36940673)
chr4 (172-318)||(36296508-36296654)
chr4 (160-315)||(36961351-36961507)
chr4 (118-233)||(36935858-36935974)
chr4 (1-85)||(35107235-35107324)
chr4 (196-244)||(36953720-36953768)
[»] chr6 (2 HSPs)
chr6 (117-318)||(24040736-24040937)
chr6 (119-314)||(24014181-24014376)
[»] chr5 (1 HSPs)
chr5 (160-254)||(34919141-34919235)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 84 - 318
Target Start/End: Complemental strand, 35107214 - 35106979
Alignment:
Q  84 aaacaaaagacgagtaacaaagcttgttctgagtt-aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagt 182  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  35107214 aaacaaaagacgagtaacaaagcttgttctgagtttaaccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagc 35107115  T
Q  183 gagaacaccattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacga 282  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35107114 gagaacaccattctccatagcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacga 35107015  T
Q  283 tgccattgatcattcttatcttctttttcaacgttc 318  Q
    ||||||||||||||||||||||||||||||| ||||    
T  35107014 tgccattgatcattcttatcttctttttcaaagttc 35106979  T

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Target: chr4; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 119 - 318
Target Start/End: Original strand, 35072682 - 35072881
Alignment:
Q  119 aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 218  Q
    ||||||||||||| ||||  || |  ||||| ||||| |  ||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  35072682 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc 35072781  T
Q  219 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttc 318  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35072782 cattttcgcattctctggttatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttc 35072881  T

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Target: chr4; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 119 - 314
Target Start/End: Complemental strand, 35098000 - 35097805
Alignment:
Q  119 aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 218  Q
    ||||||||||||||||||  || |  |||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| ||    
T  35098000 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtc 35097901  T
Q  219 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaac 314  Q
    ||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  35097900 cattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaac 35097805  T

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Target: chr4; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 119 - 314
Target Start/End: Complemental strand, 35098289 - 35098094
Alignment:
Q  119 aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 218  Q
    ||||||||||||||||||  || |  |||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| ||    
T  35098289 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtc 35098190  T
Q  219 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaac 314  Q
    ||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  35098189 cattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaac 35098094  T

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Target: chr4; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 120 - 315
Target Start/End: Original strand, 36940478 - 36940673
Alignment:
Q  120 accagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatcc 219  Q
    ||||||||| ||||||| ||| | |||| | |||||||||||||  ||||| ||||||||||||||||  |||||||||||||||||||||| |||||||    
T  36940478 accagagatatcaatggttttaacttcatgattcttgatctcttttttaggcacagtgacagtgagaatgccattctccattgcagctttcatttgatcc 36940577  T
Q  220 attttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacg 315  Q
    ||||| |||||||| || ||||| || ||||||||||| || |||||||||||||||||  ||||||||||||| |||||||||||||| ||||||    
T  36940578 attttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttcttatcttctttctcaacg 36940673  T

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Target: chr4; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 172 - 318
Target Start/End: Original strand, 36296508 - 36296654
Alignment:
Q  172 acagtgacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctac 271  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||| || || ||||| ||||||||||| || |||||||||||||    
T  36296508 acagttacagtgagaacaccattctccattgcagctttcacctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctac 36296607  T
Q  272 gctccacacgatgccattgatcattcttatcttctttttcaacgttc 318  Q
    ||||||| ||||||||||| |  ||||| |||||||| |||||||||    
T  36296608 gctccacgcgatgccattggttgttcttgtcttctttctcaacgttc 36296654  T

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Target: chr4; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 160 - 315
Target Start/End: Complemental strand, 36961507 - 36961351
Alignment:
Q  160 tcttccttagggacagtgacagtgagaacaccattctccattgca-gctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaat 258  Q
    ||||||||||| | ||| |||||||||||||||||||||  ||   || ||||| |||||||| || ||||||||||  ||||||||| |||||||||||    
T  36961507 tcttccttaggaatagttacagtgagaacaccattctcccatgtttgcattcacctgatccatcttagcattctctgccaatctaaacttcctcatgaat 36961408  T
Q  259 tttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacg 315  Q
    || ||||||||| ||||||| | |||||||| ||  |||||||||||||| ||||||    
T  36961407 ttcccactgctaagctccacgcaatgccattcattgttcttatcttctttctcaacg 36961351  T

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Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 36935858 - 36935974
Alignment:
Q  118 taaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctcca-ttgcagctttcacttga 216  Q
    ||||||||||| |||||||  || | |||||||||||| | |||||| |  || || || |||||||||||||||||||||| |||||||||||||||||    
T  36935858 taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttga 36935957  T
Q  217 tccattttcgcattctc 233  Q
    |||||||| ||||||||    
T  36935958 tccattttagcattctc 36935974  T

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Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 35107324 - 35107235
Alignment:
Q  1 tcatttatggattaacagctcacatattacatcatcatag-----atttcttgcacagacatcacaaacaaagtaagcattacaaaacaa 85  Q
    ||||||||||||||||| |||||||||||||| || | |      ||| |||||||||||||||||||||||||||||||||||||||||    
T  35107324 tcatttatggattaacatctcacatattacattataacaccaagtattccttgcacagacatcacaaacaaagtaagcattacaaaacaa 35107235  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 36953720 - 36953768
Alignment:
Q  196 tccattgcagctttcacttgatccattttcgcattctctggtaatctaa 244  Q
    |||||||||||||||||||||||| |||| ||||| || || |||||||    
T  36953720 tccattgcagctttcacttgatccgttttagcattgtcaggcaatctaa 36953768  T

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Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 117 - 318
Target Start/End: Original strand, 24040736 - 24040937
Alignment:
Q  117 ttaaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttga 216  Q
    |||||||||||| |||||||  || | || ||||||||| |  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24040736 ttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattctccattgcagctttcacttga 24040835  T
Q  217 tccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24040836 tccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgt 24040935  T
Q  317 tc 318  Q
    ||    
T  24040936 tc 24040937  T

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Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 119 - 314
Target Start/End: Original strand, 24014181 - 24014376
Alignment:
Q  119 aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 218  Q
    ||||||||||||| ||||  || |  ||||| ||||| |  ||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  24014181 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc 24014280  T
Q  219 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaac 314  Q
    |||||||||||| || || || || || ||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||    
T  24014281 cattttcgcattttcgggcaacctgaatctcctcatgaactttccgctgctgcgctccacacgatgccattgatcgttcttatcttctttctcaac 24014376  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 254
Target Start/End: Complemental strand, 34919235 - 34919141
Alignment:
Q  160 tcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcat 254  Q
    ||||||||||| ||||| ||||| ||||| |||||||||||  ||||||| || |||||||||||  ||||||| || || ||||||||||||||    
T  34919235 tcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccattttaacattctcaggcaacctaaacctcctcat 34919141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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