View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0804_high_7 (Length: 263)
Name: NF0804_high_7
Description: NF0804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0804_high_7 |
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| [»] chr4 (4 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 40 - 263
Target Start/End: Complemental strand, 36297019 - 36296796
Alignment:
| Q |
40 |
caggttattcacactaagcgttgagagtaattagcaattacattccattctattctcaatttacagagttctaaaatcttcatcaaaatgtcgctgattc |
139 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36297019 |
caggttattcacactaagcattgagagtaattagcaattacattccattctattctcaatttacagagttctaaaatcttcatcaaaatgtcgctgattc |
36296920 |
T |
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| Q |
140 |
caagttcctttggtggccgaaggagcaacgttttcgatccattctcccttgatgtttgggatccctttaaggatttttcatttcccaattctgcactttc |
239 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36296919 |
caagtttctttggtggccgaaggagcaacgttttcgatccattctcccttgatgtttgggatccctttaaggatttttcatttcccaattctgcactttc |
36296820 |
T |
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| Q |
240 |
tgcttcttcatttcctcaggagaa |
263 |
Q |
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|||||||||||||||||||||||| |
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| T |
36296819 |
tgcttcttcatttcctcaggagaa |
36296796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 40 - 245
Target Start/End: Original strand, 35097444 - 35097644
Alignment:
| Q |
40 |
caggttattcacactaagcgttgagagtaattagcaattacattccattctattctcaatttacagagttctaaaatcttcatcaaaatgtcgctgattc |
139 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| |||||| |
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| T |
35097444 |
caggtcattcacactaagcattgagagtaattagcaattacattccattc-----tcaatttacacagttctaaaattttcatcaaaatgtcgttgattc |
35097538 |
T |
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| Q |
140 |
caagttcctttggtggccgaaggagcaacgttttcgatccattctcccttgatgtttgggatccctttaaggatttttcatttcccaattctgcactttc |
239 |
Q |
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|||||| |||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||||||| ||||||||| |||| |||||||| ||||||| |
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| T |
35097539 |
caagtttctttggtggccgaaggagcaacacttttgatccattctctcttgacgtttgggatcccttcaaggattttccattctccaattcttcactttc |
35097638 |
T |
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| Q |
240 |
tgcttc |
245 |
Q |
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|||||| |
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| T |
35097639 |
tgcttc |
35097644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 263
Target Start/End: Complemental strand, 35073166 - 35073023
Alignment:
| Q |
126 |
aatgtcgctgattccaagttcctttggtggccga------aggagcaacgttttcgatccattctcccttgatgtttgggatccctttaaggatttttca |
219 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| || ||||| || || ||||||||| | |
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| T |
35073166 |
aatgtcgctgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtgtgggacccattcaaggattttcct |
35073067 |
T |
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| Q |
220 |
tttcccaattctgcactttctgcttcttcatttcctcaggagaa |
263 |
Q |
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|| |||||||| ||||||||||||||||||| ||||||||||| |
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| T |
35073066 |
ttcaccaattcttcactttctgcttcttcattccctcaggagaa |
35073023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 127 - 263
Target Start/End: Original strand, 35106695 - 35106837
Alignment:
| Q |
127 |
atgtcgctgattccaagttcctttggtggcc------gaaggagcaacgttttcgatccattctcccttgatgtttgggatccctttaaggatttttcat |
220 |
Q |
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|||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || || ||||||||| | | |
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| T |
35106695 |
atgtcgttgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtttgggacccattcaaggattttcctt |
35106794 |
T |
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| Q |
221 |
ttcccaattctgcactttctgcttcttcatttcctcaggagaa |
263 |
Q |
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| T |
35106795 |
tcaccaattcttcactttctgcttcttcattccctcaggagaa |
35106837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 117 - 263
Target Start/End: Complemental strand, 24014668 - 24014522
Alignment:
| Q |
117 |
cttcatcaaaatgtcgctgattccaagttcctttggtggccgaaggagcaacgttttcgatccattctcccttgatgtttgggatccctttaaggatttt |
216 |
Q |
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|||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| |
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| T |
24014668 |
cttcttcaaaatgtcgttgattccaagtttctttggtggccgaaggagcaacgttttcgatccattctcccttgacgtttgggaccccttcaaggatttt |
24014569 |
T |
|
| Q |
217 |
tcatttcccaattctgcactttctgcttcttcatttcctcaggagaa |
263 |
Q |
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| || |||||||||||||||||||||||||||| ||||||||||| |
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| T |
24014568 |
cctttaaccaattctgcactttctgcttcttcattccctcaggagaa |
24014522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 126 - 263
Target Start/End: Complemental strand, 24041216 - 24041079
Alignment:
| Q |
126 |
aatgtcgctgattccaagttcctttggtggccgaaggagcaacgttttcgatccattctcccttgatgtttgggatccctttaaggatttttcatttccc |
225 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |||||||| |||||||| ||||| ||||||||| | || || |
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| T |
24041216 |
aatgtcgctgattccaagtttctttggtggccgaaggagcaacacttttgatccattttcccttgacgtttgggaccccttcaaggattttcctttaacc |
24041117 |
T |
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| Q |
226 |
aattctgcactttctgcttcttcatttcctcaggagaa |
263 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| |
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| T |
24041116 |
aattctgcactttctgcttcttcattccctcaggagaa |
24041079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 92 - 245
Target Start/End: Original strand, 3122884 - 3123035
Alignment:
| Q |
92 |
ttctcaatttacagagttctaaaatcttcatcaaaatgtcgctgattccaagttcctttggtggccgaaggagcaacgttttcgatccattctcccttga |
191 |
Q |
| |
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||||||||||||| |||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||| || |
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| T |
3122884 |
ttctcaatttacaaagttctcaa--cttcatcaaaatgtcgctgattccaagtttctttggtggccgaatgagcaacgttttcgatcccttcttcctcga |
3122981 |
T |
|
| Q |
192 |
tgtttgggatccctttaaggatttttcatttcccaattctgcactttctgcttc |
245 |
Q |
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|||||||| ||||| ||||||||| |||| |||| |||| | |||||||||| |
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| T |
3122982 |
cgtttgggaccccttcaaggattttccattctccaactctgtagtttctgcttc |
3123035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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