View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0804_low_1 (Length: 474)
Name: NF0804_low_1
Description: NF0804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0804_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 45 - 464
Target Start/End: Complemental strand, 46843577 - 46843158
Alignment:
| Q |
45 |
catctacaagaacatcaacaagaccaagaccaacaacttttgactccaatttatcccaacaacgtttgtgttcaccacaaacatgttgtgttctagggct |
144 |
Q |
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| T |
46843577 |
catctacaagaacatcaacaagaccaagaccaacaacttttgactccaatttatcccaacaacgtttgtgttcaccacaaacatgttgtgttatagggct |
46843478 |
T |
|
| Q |
145 |
atttgtttcagaccaaaaaggattcttgaaacaagaaaaaggcttggtatcaagtattgaagtaggactcatcatggtttcagtttcatgaaaacctttt |
244 |
Q |
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| T |
46843477 |
atttgtttcagaccaaaaaggattcttgaaacaagaaaaaggcttggtatcaagtattgaagtaggactcatcatggtttcagtttcatgaaaacctttt |
46843378 |
T |
|
| Q |
245 |
gatgtgaacaactttggagaattgaagaaggatgaagtgattttctttgaactagaatcttccattatagtagtagcttagtcacaaactgtgaaacaaa |
344 |
Q |
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| T |
46843377 |
gatgtgaacaactttggagaattgaagaaggatgaagtgattttctttgaactagaatcttccattatagtagtagcttagtcacaaactgtgaaacaaa |
46843278 |
T |
|
| Q |
345 |
cacaacacataaaacaagaatatagcaaaaatttagaaacatgcattctactgaaagctagaaaacatgaactgaaaataagtttccatgaatagaaaca |
444 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46843277 |
aacaacacataaaacaagaatatagcagaaatttagaaacatgcattctactgaaagctagaaaacatgaactgaaaataagtttccatgaatagaaaca |
46843178 |
T |
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| Q |
445 |
gaaacctatctatttctctg |
464 |
Q |
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|||||||||||||||||||| |
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| T |
46843177 |
gaaacctatctatttctctg |
46843158 |
T |
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