View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0804_low_13 (Length: 320)
Name: NF0804_low_13
Description: NF0804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0804_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 42184883 - 42184615
Alignment:
| Q |
23 |
cacagaaatggaatctgatcaccaattttacaggcctctatctccaacttttttcatttcagtatgttcctttccacaaaaacctgaagatgctatatgt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42184883 |
cacagaaatggaatctgatcaccaattttacaggcctctatctccaacttttttcatttcagtatgttcctttccacaaaaacctgaagatgctatatgt |
42184784 |
T |
|
| Q |
123 |
tagttaaaggagataccatgccagcatttaagacagtgaggttcaatcaaggtgactgcaaggaattctatataattaaaatttgcctcaagctaccaca |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42184783 |
tagttaaaggagataccatgccagcatttaagacagtgaggttcaatcaaggtgactgcaaggaattctatataattaaaatctgcctcaagctaccaca |
42184684 |
T |
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| Q |
223 |
aaatgatccctctttcatagtgatatatagtggtgtccaacctattttgaatctttagtacaaactctt |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42184683 |
aaatgatccctctttcatagtgatatatagtggtgtccaacctattttgaatctttagtacaaactctt |
42184615 |
T |
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