View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0804_low_17 (Length: 266)
Name: NF0804_low_17
Description: NF0804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0804_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 30623947 - 30623780
Alignment:
| Q |
1 |
tttggtactgatgatcttctccaatacattgctgataggtaatacccattttactttcctattctctcttttattttgtgagtatcattatttaataggt |
100 |
Q |
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| T |
30623947 |
tttggtactgatgatcttctccaatacattgctgataggtaatacccattttactttcctattctctcttctattttgtgagtatcattatttaataggt |
30623848 |
T |
|
| Q |
101 |
cgtttgtttctttctgtgcaaaggggattatgagaagcgatgtttgtttcttttcatgtttcaatttttatt |
172 |
Q |
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| T |
30623847 |
cgtttgt----ttctgtgcaaaggggattatgagaagcgatgtttgtttcttttcatgttttaatatttatt |
30623780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 40892368 - 40892310
Alignment:
| Q |
10 |
gatgatcttctccaatacattgctgataggtaatacccattttactttcctattctctc |
68 |
Q |
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| T |
40892368 |
gatgatcttctccaatacattgctggtaggtaatgccaaatttattttcatattctctc |
40892310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38284680 - 38284720
Alignment:
| Q |
1 |
tttggtactgatgatcttctccaatacattgctgataggta |
41 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||| |
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| T |
38284680 |
tttggttctgatcatcttctccaatacattgctgataggta |
38284720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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