View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0804_low_20 (Length: 254)
Name: NF0804_low_20
Description: NF0804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0804_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 12561584 - 12561359
Alignment:
| Q |
1 |
aagtgagtgtcaaggagcactacttcaagttaaaaacaacatatagagttccaaatttttaatttctaaaaagttgatgtttgagcggtattcattttat |
100 |
Q |
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| T |
12561584 |
aagtgagtgtcaaggagcactacttcaagttaaaaacaacatatagagttccaaatttttaacttctaaaaatttgatgtttgagcggtattcattttat |
12561485 |
T |
|
| Q |
101 |
ttttctatttctttctcgtgtttataattgaatgcagccatccaatactctactgtcagacaccattggactttttctactggtgagatggggagggagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12561484 |
ttttctatttctttctcgtgtttataattgaatgcacccatccaatactctactgtcagacaccattggactttttctactggtgagatggggagggagc |
12561385 |
T |
|
| Q |
201 |
acttttccatgagtatagttaagtct |
226 |
Q |
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| T |
12561384 |
acttttccatgagtttagttaagtct |
12561359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 44837092 - 44837225
Alignment:
| Q |
4 |
tgagtgtcaaggagcactacttcaa-gttaaaaacaacatatagagttccaaatttttaatttctaaaaagttgatgtttgagcggtattcattttattt |
102 |
Q |
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||||||||||||| || |||||||| |||| ||||||||| ||||||||||||||||| || ||| ||||| | ||| ||| |||||||||| | | |
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| T |
44837092 |
tgagtgtcaaggaccaatacttcaaagttacaaacaacattctgagttccaaatttttaaattttaataagttattatttcagcactattcattttgtct |
44837191 |
T |
|
| Q |
103 |
ttctatttctttctcgtgtttataattgaatgca |
136 |
Q |
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| T |
44837192 |
ttctattttcttcccatgtttatagttgcatgca |
44837225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 44848869 - 44848902
Alignment:
| Q |
162 |
accattggactttttctactggtgagatggggag |
195 |
Q |
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| T |
44848869 |
accattggcctttttctactggtgagatggggag |
44848902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 31009068 - 31009004
Alignment:
| Q |
29 |
gttaaaaacaacatatagagttccaaatttttaatttctaaaaagttgatgtttgagcggtattc |
93 |
Q |
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|||||||||||||||| |||||||| ||| | ||||||||||| ||| || |||| || |||||| |
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| T |
31009068 |
gttaaaaacaacatattgagttccatattatcaatttctaaaatgttaatatttgggcagtattc |
31009004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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