View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0804_low_21 (Length: 253)
Name: NF0804_low_21
Description: NF0804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0804_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 12562237 - 12561996
Alignment:
| Q |
9 |
caacaaaatatataatgagagaagttccagtaactgttgtttaggtttaaagggtaaaatgagaaatttacattaaaaa-taagggtaaaattggaaaga |
107 |
Q |
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| T |
12562237 |
caacaaaatataaaatgagagaagttccactaactattgtttacgtttaaagggtaaaatgggaaatttacattaaaaaataagggtaaaattggaaaga |
12562138 |
T |
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| Q |
108 |
aattaggctacaccaaaaagttgttttgccatctagaaggatcaaattgatttgtaaaattattgtgaaagaaaacaaattcaatgaatacttagctaat |
207 |
Q |
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| T |
12562137 |
aattaggctacaccaaaaagttgttttgccttctagaaggatcaaattgatttgtaaaattattgtaaaagaaaacaaattcaatgaatacttagctaat |
12562038 |
T |
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| Q |
208 |
gcttactcattaaaaaaccattgaacaatgaaatgtgatttg |
249 |
Q |
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| T |
12562037 |
gcttactcattaaaaaaccattgaacaatgaaatgtgatttg |
12561996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 12562947 - 12562715
Alignment:
| Q |
9 |
caacaaaatatataatgagagaagttccagtaactgttgtttaggtttaaagggtaaaatgagaaatttacattaaaaa-taagggtaaaattggaaaga |
107 |
Q |
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| T |
12562947 |
caacaaaatatataatgagagaagttccggtaattgttgtttaggtttaaagggtaaactgagaaatttacattaaaaaataagggtcaaattggaaaga |
12562848 |
T |
|
| Q |
108 |
aattaggctacaccaaaaagttgttttgccatctagaaggatcaaattgatttgtaaaattattgtgaaagaaaacaaattcaatgaatacttagctaat |
207 |
Q |
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| T |
12562847 |
aagtaggttacaccaaaaagttgttttgccttctagaaggatcggactgatttgtaaaattattgagaaagaaaacaaattcaatgaatacttagctaat |
12562748 |
T |
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| Q |
208 |
gcttactcattaaaaaaccattgaacaatgaaa |
240 |
Q |
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| T |
12562747 |
gtttactgagcaaaaaaccgttgaacaatgaaa |
12562715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 28381890 - 28381801
Alignment:
| Q |
38 |
gtaactgttgtttaggtttaaagggtaaaatgagaaatttacattaaaa--ataagggtaaaattggaaagaaattaggctacaccaaaa |
125 |
Q |
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| T |
28381890 |
gtaattgttgttcagttttgaagggtaaaatgaaaaattcacattaaaagaataagggtaaaatgggaaagaaagtaggctacaccaaaa |
28381801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 27260621 - 27260707
Alignment:
| Q |
40 |
aactgttgtttaggtttaaagggtaaaatgagaaatttacattaaaaa-taagggtaaaattggaaagaaattaggctacaccaaaa |
125 |
Q |
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| T |
27260621 |
aactgttgtttagttttcaagggtaaaatgtgaaattctcattaaaaagggagggtgtaattggaaaaaaaataggctacaccaaaa |
27260707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 13111606 - 13111692
Alignment:
| Q |
40 |
aactgttgtttaggtttaaagggtaaaatgagaaatttacattaaaaa-taagggtaaaattggaaagaaattaggctacaccaaaa |
125 |
Q |
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||||||||||||| ||| |||||||||||| |||||| ||||||||| ||||| ||||||||| ||| ||||||||| ||||| |
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| T |
13111606 |
aactgttgtttagttttcaagggtaaaatgtgaaattctcattaaaaagggagggtgtaattggaaaaaaaataggctacatcaaaa |
13111692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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