View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0804_low_3 (Length: 418)
Name: NF0804_low_3
Description: NF0804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0804_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 11 - 411
Target Start/End: Complemental strand, 5677439 - 5677040
Alignment:
| Q |
11 |
atgatggctagagggtttaaacagtttgctattggtcctattctaatgctctatgcacagaaatctctacgaggtttggtgagatccctctctagaaaag |
110 |
Q |
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| T |
5677439 |
atgatggctagagggtttaaacagtttgctattggtcctattctaatgctctatgcacagaaatctctacgaggtttggtgagatccctctctaaaaaag |
5677340 |
T |
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| Q |
111 |
gatagaaaagttaaaaataaatatgcttttatagagtagagatctatgtagcaccgacacaagttgtgtctgtttcccgcactgacacatataattacat |
210 |
Q |
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| T |
5677339 |
gatagaaaagttaaaaataaatatgcttttatagagtagagatctatgtagcaccgacacaagttgtgtctgtttcccgcactgacacatataattacat |
5677240 |
T |
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| Q |
211 |
ttaacgagtgtctatgtgttagtgttgtgatgattttcatatctgtgtcggtgctccataggtagaaatctccttgtttgcaaaagaaaagaagaacaca |
310 |
Q |
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| T |
5677239 |
ttaacgagtgtctatgtgttagtgttgtgatgattttcatatttgtgtcggtgctccataggtagaaatctcc-tgtttgcaaaagaaaagaagaacaca |
5677141 |
T |
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| Q |
311 |
attactatgattgtagtatataagatacatgttttgaaaaatgcgaacattaattagacctttatacactcaaaagcattgtaacttagcttttcttttc |
410 |
Q |
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| T |
5677140 |
attactatgattgcagtatataagatacatgttttgaaaaatgcgaacattaattagacctttatacactcaaaagcattgtaacttagcttttcttttc |
5677041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 39777972 - 39778051
Alignment:
| Q |
11 |
atgatggctagagggtttaaacagtttgctattggtcctattctaatgctctatgcacagaaatctctacgaggtttggt |
90 |
Q |
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| T |
39777972 |
atgatggctagagggtttaaaaattgtggtattggtcctattataatgctttattcacagaaatctctgagaggtttggt |
39778051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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