View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0804_low_4 (Length: 412)
Name: NF0804_low_4
Description: NF0804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0804_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 57 - 403
Target Start/End: Original strand, 31923785 - 31924134
Alignment:
| Q |
57 |
gcatcgcggcggaaatgacccgggtccacctagaaaccttcttggccgatctacggagacctttgatttttcttgagactccatgtcttgtctagtttcc |
156 |
Q |
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| T |
31923785 |
gcatcgcggcggaaatgacccgggtccacctagaaaccttcttggccaatctacggagacctttgatttttcttgagactccatgtcttgtctagttttc |
31923884 |
T |
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| Q |
157 |
aagttaacttgctgcccaaaataatcataattaaccggtcgttaatgcttgaataacacaatcgtaactatcatatttcgttaatgtccaaaataatcat |
256 |
Q |
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| T |
31923885 |
acgttaatttgctgcccaaaataatcataattaaccggtcgttaatgctcgaataacacaaccgtaactatcatatttcgttaatgcccaaaataatcat |
31923984 |
T |
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| Q |
257 |
attatttttacaaaagccaatcatgcagtatattaaaccacaccgtctaagaataacactttgtagtttctatgaaattattgtaggtcactgatattct |
356 |
Q |
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|||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
31923985 |
atta-ttttacaaaagccaatcatgcaatatattaaactacaccgtctaagaataacactttgtagtttctatgaaattattgtaggtcaccgtgattca |
31924083 |
T |
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| Q |
357 |
gacatgtctacggtgaaat----caaacacacattataatatcatattctt |
403 |
Q |
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||||||| |||||||||| |||||||||| ||||||||||||||||| |
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| T |
31924084 |
gacatgttcacggtgaaatcaaacaaacacacactataatatcatattctt |
31924134 |
T |
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