View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0804_low_5 (Length: 380)

Name: NF0804_low_5
Description: NF0804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0804_low_5
NF0804_low_5
[»] chr5 (11 HSPs)
chr5 (4-370)||(18739347-18739712)
chr5 (264-323)||(3174233-3174292)
chr5 (264-314)||(10572772-10572822)
chr5 (264-314)||(32863713-32863763)
chr5 (264-319)||(19209107-19209162)
chr5 (132-199)||(3174060-3174125)
chr5 (132-199)||(10572599-10572664)
chr5 (132-199)||(32863544-32863609)
chr5 (264-319)||(23737951-23738006)
chr5 (214-268)||(19209187-19209241)
chr5 (214-268)||(23737872-23737926)
[»] scaffold1160 (2 HSPs)
scaffold1160 (101-268)||(2343-2511)
scaffold1160 (11-65)||(2274-2328)
[»] chr8 (25 HSPs)
chr8 (101-268)||(1667989-1668149)
chr8 (101-268)||(16658704-16658864)
chr8 (101-268)||(38521301-38521458)
chr8 (132-261)||(6786344-6786474)
chr8 (244-314)||(780362-780434)
chr8 (264-319)||(1668174-1668229)
chr8 (264-319)||(16658889-16658944)
chr8 (264-319)||(38521221-38521276)
chr8 (264-314)||(22432291-22432341)
chr8 (264-314)||(29182575-29182625)
chr8 (132-194)||(22014740-22014800)
chr8 (264-323)||(22014904-22014963)
chr8 (132-199)||(774839-774904)
chr8 (132-199)||(780493-780558)
chr8 (11-75)||(38521464-38521527)
chr8 (264-314)||(774680-774730)
chr8 (11-64)||(1667930-1667983)
chr8 (11-63)||(16658635-16658687)
chr8 (132-199)||(18068471-18068536)
chr8 (132-199)||(22432449-22432514)
chr8 (132-199)||(27576659-27576724)
chr8 (264-307)||(6786507-6786550)
chr8 (214-268)||(43916091-43916145)
chr8 (282-314)||(27576856-27576888)
chr8 (132-199)||(29182733-29182798)
[»] chr2 (9 HSPs)
chr2 (101-268)||(3935447-3935607)
chr2 (101-268)||(38978448-38978608)
chr2 (264-319)||(3935367-3935422)
chr2 (264-314)||(25697567-25697617)
chr2 (264-323)||(32339611-32339672)
chr2 (264-305)||(38978382-38978423)
chr2 (11-75)||(38978614-38978677)
chr2 (23-63)||(3935624-3935664)
chr2 (132-199)||(25697725-25697790)
[»] chr4 (25 HSPs)
chr4 (101-268)||(23218295-23218455)
chr4 (101-268)||(45143856-45144016)
chr4 (101-268)||(45152625-45152785)
chr4 (165-268)||(13740327-13740433)
chr4 (264-323)||(13740243-13740302)
chr4 (264-323)||(21355936-21355995)
chr4 (264-335)||(45144041-45144112)
chr4 (264-335)||(45152810-45152881)
chr4 (140-268)||(21355773-21355911)
chr4 (264-319)||(23218215-23218270)
chr4 (264-316)||(54785186-54785238)
chr4 (264-314)||(21604495-21604545)
chr4 (264-314)||(46164366-46164416)
chr4 (264-314)||(47825977-47826027)
chr4 (165-268)||(33754038-33754141)
chr4 (268-314)||(8432980-8433026)
chr4 (11-75)||(23218461-23218524)
chr4 (132-199)||(54785346-54785411)
chr4 (264-319)||(33753956-33754013)
chr4 (132-199)||(8433138-8433203)
chr4 (132-199)||(21604322-21604387)
chr4 (132-199)||(46164524-46164589)
chr4 (132-199)||(47825805-47825870)
chr4 (11-65)||(45143787-45143841)
chr4 (11-65)||(45152556-45152610)
[»] chr3 (11 HSPs)
chr3 (101-268)||(2338889-2339049)
chr3 (101-268)||(52893315-52893475)
chr3 (264-335)||(52893500-52893571)
chr3 (264-335)||(21239504-21239575)
chr3 (196-268)||(21239407-21239479)
chr3 (264-314)||(9456483-9456533)
chr3 (11-64)||(52893249-52893302)
chr3 (11-75)||(2339055-2339118)
chr3 (101-141)||(21239357-21239397)
chr3 (264-319)||(2338811-2338864)
chr3 (132-199)||(9456310-9456375)
[»] scaffold0393 (2 HSPs)
scaffold0393 (102-268)||(11244-11400)
scaffold0393 (264-323)||(11160-11219)
[»] chr1 (14 HSPs)
chr1 (264-314)||(26014536-26014586)
chr1 (264-314)||(29599251-29599301)
chr1 (132-194)||(6165193-6165253)
chr1 (132-194)||(16764681-16764741)
chr1 (264-314)||(324748-324798)
chr1 (264-314)||(26355075-26355125)
chr1 (132-194)||(10801713-10801773)
chr1 (264-323)||(10801547-10801608)
chr1 (132-199)||(324575-324640)
chr1 (132-199)||(26354901-26354966)
chr1 (132-199)||(29599409-29599474)
chr1 (264-319)||(16764520-16764577)
chr1 (264-304)||(6165049-6165089)
chr1 (132-199)||(26014422-26014487)
[»] chr7 (8 HSPs)
chr7 (264-314)||(6472244-6472294)
chr7 (264-314)||(9371876-9371926)
chr7 (264-314)||(21358022-21358072)
chr7 (132-199)||(6472402-6472467)
chr7 (132-199)||(9371703-9371768)
chr7 (264-307)||(35012981-35013024)
chr7 (264-321)||(44660378-44660435)
chr7 (132-199)||(35013133-35013198)
[»] chr6 (2 HSPs)
chr6 (264-314)||(32397302-32397352)
chr6 (132-199)||(32397128-32397193)
[»] scaffold0054 (2 HSPs)
scaffold0054 (132-194)||(2768-2828)
scaffold0054 (264-319)||(2932-2989)
[»] scaffold0285 (2 HSPs)
scaffold0285 (132-193)||(8528-8587)
scaffold0285 (264-319)||(8366-8423)


Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 4 - 370
Target Start/End: Complemental strand, 18739712 - 18739347
Alignment:
Q  4 gtaataataatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaaccaagtgagaagtgagaacagagaaagtgaaacggaatc 103  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18739712 gtaataataatatttccattttagtctcatttccccttcacgtttctctttcatctgagaaccaagtgagaagtgagaacagagaaagtgaaacggaatc 18739613  T
Q  104 cttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgcgatt 203  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18739612 cttttcttctcccaagcatagcaaatcgatccaccacc--------gccggtgagccgcgagaccactctcctctttctccatccatcaccgccgcgatt 18739521  T
Q  204 actctccttcttcttc---aatttagagagctttcttc----atctctctccacaaaccctaattattgtaatttccttcaattatgattctgatttgat 296  Q
    ||||||||||||||||   |||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18739520 actctccttcttcttcttcaatttagagagctttcttccttcatctctctccacaaaccctaattattgtaatttccttcaattatgattctgatttgat 18739421  T
Q  297 gattacatgttatttagttgatttccaaccctaattgttgttaattgttaaacctgttgttctttgcccctttg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18739420 gattacatgttatttagttgatttccaaccctaattgttgttaattgttaaacctgttgttctttgcctctttg 18739347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 3174233 - 3174292
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttcca 323  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  3174233 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatttcca 3174292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 10572772 - 10572822
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  10572772 tgtaatttccttcaattgtgattctgatttgatgattacatgttctttagt 10572822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 32863713 - 32863763
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  32863713 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 32863763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 19209162 - 19209107
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatt 319  Q
    ||||||||||||||| | |||||||| ||| ||||||||||||| |||||||||||    
T  19209162 tgtaatttccttcaaatctgattctgctttaatgattacatgttctttagttgatt 19209107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 3174060 - 3174125
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  3174060 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 3174125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 10572599 - 10572664
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  10572599 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 10572664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 32863544 - 32863609
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  32863544 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 32863609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 23737951 - 23738006
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatt 319  Q
    ||||||||||||||| | |||||||  ||| ||||||||||||| |||||||||||    
T  23737951 tgtaatttccttcaaatctgattcttctttaatgattacatgttctttagttgatt 23738006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 19209241 - 19209187
Alignment:
Q  214 ttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
    ||||||| |||| |||||| ||| |||||||||||| ||||||||||| ||||||    
T  19209241 ttcttcagtttaaagagctatctgcatctctctccataaaccctaattgttgtaa 19209187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 23737872 - 23737926
Alignment:
Q  214 ttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
    ||||||| |||| |||||| ||| |||||||||||| ||||||||||| ||||||    
T  23737872 ttcttcagtttaaagagctatctgcatctctctccataaaccctaattgttgtaa 23737926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 101 - 268
Target Start/End: Original strand, 2343 - 2511
Alignment:
Q  101 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc- 199  Q
    |||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||||| ||||     
T  2343 atccttttcttctcccaaccaaagcaaatcgatccaccaccacaccaccgccggtgagccgcga--ccactctcctccttctccatccatcaccgccgcc 2440  T
Q  200 --gattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
      |||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  2441 gcgattactctcctccttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaa 2511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 2274 - 2328
Alignment:
Q  11 taatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaac 65  Q
    ||||||||||  ||||||||||||||| ||||  |||||||||||||||||||||    
T  2274 taatatttcctgttcagtctcatttcctcttcccgtttctctttcatctgagaac 2328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 101 - 268
Target Start/End: Original strand, 1667989 - 1668149
Alignment:
Q  101 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc- 199  Q
    |||||||||||||||||| || |||||||||||||||||||        |||||||||||||||  ||||||||||| |||||||||||||||| ||||     
T  1667989 atccttttcttctcccaaccaaagcaaatcgatccaccacc--------gccggtgagccgcga--ccactctcctccttctccatccatcaccgccgcc 1668078  T
Q  200 --gattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
      |||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  1668079 gcgattactctcctccttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaa 1668149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 101 - 268
Target Start/End: Original strand, 16658704 - 16658864
Alignment:
Q  101 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc- 199  Q
    |||||||||||||||||| || |||||||||||||||||||        |||||||||||||||  ||||||||||| |||||||||||||||| ||||     
T  16658704 atccttttcttctcccaaccaaagcaaatcgatccaccacc--------gccggtgagccgcga--ccactctcctccttctccatccatcaccgccgcc 16658793  T
Q  200 --gattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
      |||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  16658794 gcgattactctcctccttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaa 16658864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 101 - 268
Target Start/End: Complemental strand, 38521458 - 38521301
Alignment:
Q  101 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcac---ctcc 197  Q
    |||||||||||||||||| || |||||||||||||||||||        |||||||||||||||  ||||||| ||| |||||||||||||||   | ||    
T  38521458 atccttttcttctcccaaccaaagcaaatcgatccaccacc--------gccggtgagccgcga--ccactcttctccttctccatccatcactgccgcc 38521369  T
Q  198 gcgattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
    |||||||||||||| ||||   | ||||||||| | ||| |||||||||||||||||||||||| ||||||    
T  38521368 gcgattactctcctccttc---agtttagagagttatctccatctctctccacaaaccctaattgttgtaa 38521301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 132 - 261
Target Start/End: Original strand, 6786344 - 6786474
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc---gattactctccttcttcttcaatttagag 228  Q
    ||||||||||| ||| ||||||  || ||||||  ||||||||||| |||||||||||||||| ||||   |||||||||||| |||||||| ||| ||     
T  6786344 atccaccaccaaaccaccgccgtcgaaccgcga--ccactctcctccttctccatccatcaccgccgccgcgattactctcctccttcttcagttttgaa 6786441  T
Q  229 agctttcttcatctctctccacaaaccctaatt 261  Q
    |||| ||| ||||||||||||||||||||||||    
T  6786442 agctatctccatctctctccacaaaccctaatt 6786474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 780434 - 780362
Alignment:
Q  244 tctccacaaaccctaatt--attgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||||  | ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  780434 tctccacaaaccctaatttgaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 780362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 1668174 - 1668229
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatt 319  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  1668174 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 1668229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 16658889 - 16658944
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatt 319  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  16658889 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 16658944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 38521276 - 38521221
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatt 319  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  38521276 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 38521221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 22432341 - 22432291
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  22432341 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 22432291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 29182625 - 29182575
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  29182625 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 29182575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 22014740 - 22014800
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacc 194  Q
    ||||||||||||||| |||| ||||||||||||  ||||||||||| ||||||||||||||||    
T  22014740 atccaccaccacaccaccgctggtgagccgcga--ccactctcctccttctccatccatcacc 22014800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 22014904 - 22014963
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttcca 323  Q
    ||||||||||||||||||||||| |  |||||||||||||| || |||||||||||||||    
T  22014904 tgtaatttccttcaattatgattattgtttgatgattacatattctttagttgatttcca 22014963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 774904 - 774839
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| ||||||| || ||||||  ||||||||||| |||||||||||||||| ||||    
T  774904 atccaccaccacaccaccgccggcgaaccgcga--ccactctcctccttctccatccatcaccgccgc 774839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 780558 - 780493
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| ||||||| || ||||||  ||||||||||| |||||||||||||||| ||||    
T  780558 atccaccaccacaccaccgccggcgaaccgcga--ccactctcctccttctccatccatcaccgccgc 780493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 38521527 - 38521464
Alignment:
Q  11 taatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaaccaagtgagaa 75  Q
    ||||||||||  ||||||||||||||| ||||  |||||||||||||||||||| ||||||||||    
T  38521527 taatatttcctattcagtctcatttcctcttcccgtttctctttcatctgagaa-caagtgagaa 38521464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 774730 - 774680
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||| |||| |||||||||| ||||||    
T  774730 tgtaatttccttcaattctgattctgatatgataattacatgttctttagt 774680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 1667930 - 1667983
Alignment:
Q  11 taatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaa 64  Q
    ||||||||||  |||||||||||| || |||| |||||||||||||||||||||    
T  1667930 taatatttcctattcagtctcattccctcttcctgtttctctttcatctgagaa 1667983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 16658635 - 16658687
Alignment:
Q  11 taatatttccatttcagtctcatttccccttcatgtttctctttcatctgaga 63  Q
    ||||||||||  ||||||||||||||| ||||  |||||||||||||||||||    
T  16658635 taatatttcctattcagtctcatttcctcttcccgtttctctttcatctgaga 16658687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 18068471 - 18068536
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  18068471 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 18068536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 22432514 - 22432449
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  22432514 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 22432449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 27576659 - 27576724
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  27576659 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 27576724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 6786507 - 6786550
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgtt 307  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||    
T  6786507 tgtaacttccttcaattctgattttgatttgatgattacatgtt 6786550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 43916091 - 43916145
Alignment:
Q  214 ttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
    ||||||| ||||||||||| ||| |||||||||||| ||||||| ||| ||||||    
T  43916091 ttcttcagtttagagagctatctccatctctctccataaaccctgattgttgtaa 43916145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 27576856 - 27576888
Alignment:
Q  282 tgattctgatttgatgattacatgttatttagt 314  Q
    |||||||||||||||||||||||||| ||||||    
T  27576856 tgattctgatttgatgattacatgttctttagt 27576888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 29182798 - 29182733
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | || || |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  29182798 atccaccaccacaccactgctggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 29182733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 101 - 268
Target Start/End: Complemental strand, 3935607 - 3935447
Alignment:
Q  101 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc- 199  Q
    |||||||||||||||||| || |||||||||||||||||||        |||||||||||||||  ||||||||||| |||||||||||||||| ||||     
T  3935607 atccttttcttctcccaaccaaagcaaatcgatccaccacc--------gccggtgagccgcga--ccactctcctccttctccatccatcaccgccgcc 3935518  T
Q  200 --gattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
      |||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  3935517 gcgattactctcctacttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaa 3935447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 101 - 268
Target Start/End: Complemental strand, 38978608 - 38978448
Alignment:
Q  101 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgcg 200  Q
    |||||||||||||||||| || ||||||||||||||| |||        |||||||||||||||   |||||||||| |||||||||||||||| ||||     
T  38978608 atccttttcttctcccaaccaaagcaaatcgatccactacc--------gccggtgagccgcgat--cactctcctccttctccatccatcaccgccgcc 38978519  T
Q  201 ---attactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
       ||||||||||| |||||||| |||||| |||| ||| |||||||||||||||||||||||| ||||||    
T  38978518 gcaattactctcctccttcttcagtttagaaagctatctccatctctctccacaaaccctaattgttgtaa 38978448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 3935422 - 3935367
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatt 319  Q
    ||||||||||||||||||||||| | |||||||||||||||||| |||||||||||    
T  3935422 tgtaatttccttcaattatgattataatttgatgattacatgttctttagttgatt 3935367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 25697617 - 25697567
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  25697617 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 25697567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 32339611 - 32339672
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacat--gttatttagttgatttcca 323  Q
    |||||||| ||||||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  32339611 tgtaattttcttcaattatgattctgatttgatgattacatgagttctttagttgatttcca 32339672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 38978423 - 38978382
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatg 305  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  38978423 tgtaatttccttcaattatgattatgatttgatgattacatg 38978382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 38978677 - 38978614
Alignment:
Q  11 taatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaaccaagtgagaa 75  Q
    ||||||||||  |||||| |||||||| ||||  |||||||||||||||||||| ||||||||||    
T  38978677 taatatttcctattcagtttcatttcctcttcccgtttctctttcatctgagaa-caagtgagaa 38978614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 3935664 - 3935624
Alignment:
Q  23 ttcagtctcatttccccttcatgtttctctttcatctgaga 63  Q
    ||||||||||||||| ||||  |||||||||||||||||||    
T  3935664 ttcagtctcatttcctcttcccgtttctctttcatctgaga 3935624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 25697790 - 25697725
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | || || |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  25697790 atccaccaccacaccactgctggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 25697725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 101 - 268
Target Start/End: Complemental strand, 23218455 - 23218295
Alignment:
Q  101 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcac---ctcc 197  Q
    |||||||||||||||||| || |||||||||||||||||||        |||||||||||||||  ||||||||||| |||||||||||||||   | ||    
T  23218455 atccttttcttctcccaaccaaagcaaatcgatccaccacc--------gccggtgagccgcga--ccactctcctccttctccatccatcactgccgcc 23218366  T
Q  198 gcgattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
    |||||||||||||| |||||||| ||||||||| | ||| |||||||||||||||||||||||| ||||||    
T  23218365 gcgattactctcctccttcttcagtttagagagttatctccatctctctccacaaaccctaattgttgtaa 23218295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 268
Target Start/End: Original strand, 45143856 - 45144016
Alignment:
Q  101 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacc---tcc 197  Q
    |||||||||||||||||| || |||||||||||||||||||        |||||||||||||||   |||||||||| ||||||||||||||||   |||    
T  45143856 atccttttcttctcccaaccaaagcaaatcgatccaccacc--------gccggtgagccgcgat--cactctcctccttctccatccatcaccgcctcc 45143945  T
Q  198 gcgattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
    |||||||||||||| || ||||| |||||| |||| ||| |||||||||||||||||||||||| ||||||    
T  45143946 gcgattactctcctcctccttcagtttagaaagctatctccatctctctccacaaaccctaattgttgtaa 45144016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 268
Target Start/End: Original strand, 45152625 - 45152785
Alignment:
Q  101 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacc---tcc 197  Q
    |||||||||||||||||| || |||||||||||||||||||        |||||||||||||||   |||||||||| ||||||||||||||||   |||    
T  45152625 atccttttcttctcccaaccaaagcaaatcgatccaccacc--------gccggtgagccgcgat--cactctcctccttctccatccatcaccgcctcc 45152714  T
Q  198 gcgattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
    |||||||||||||| || ||||| |||||| |||| ||| |||||||||||||||||||||||| ||||||    
T  45152715 gcgattactctcctcctccttcagtttagaaagctatctccatctctctccacaaaccctaattgttgtaa 45152785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 165 - 268
Target Start/End: Complemental strand, 13740433 - 13740327
Alignment:
Q  165 gaccactctcctctttctccatccatcacctccgc---gattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaatt 261  Q
    ||||||||||||| |||||||||||||||| ||||   |||||||||||| |||||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  13740433 gaccactctcctccttctccatccatcaccgccgccgcgattactctcctccttcttcagtttagagagctatctccatctctctccacaaaccctaatt 13740334  T
Q  262 attgtaa 268  Q
     ||||||    
T  13740333 gttgtaa 13740327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 13740302 - 13740243
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttcca 323  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  13740302 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatttcca 13740243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 21355936 - 21355995
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttcca 323  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  21355936 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagttgatttcca 21355995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 45144041 - 45144112
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttccaaccctaattgtt 335  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||  |||| |||||||||    
T  45144041 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattgtcaactctaattgtt 45144112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 45152810 - 45152881
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttccaaccctaattgtt 335  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||  |||| |||||||||    
T  45152810 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattgtcaactctaattgtt 45152881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 140 - 268
Target Start/End: Original strand, 21355773 - 21355911
Alignment:
Q  140 ccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgcg------------attactctccttcttcttcaatttaga 227  Q
    ||||||| |||| ||||||||||||  ||||||||||| |||||||||||||||| ||||             ||||||||||| |||||||| ||||||    
T  21355773 ccacaccaccgcgggtgagccgcga--ccactctcctccttctccatccatcaccgccgccgcgattactttcattactctcctccttcttcagtttaga 21355870  T
Q  228 gagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
    ||||| ||| |||||||||||||||||||||||| ||||||    
T  21355871 gagctatctccatctctctccacaaaccctaattgttgtaa 21355911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 23218270 - 23218215
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatt 319  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  23218270 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 23218215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 54785238 - 54785186
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  54785238 tgtaatttccttcaattatgattctgatttgatgattacatgttcttaagttg 54785186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 21604495 - 21604545
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  21604495 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 21604545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 46164416 - 46164366
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  46164416 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 46164366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 47825977 - 47826027
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  47825977 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 47826027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 268
Target Start/End: Complemental strand, 33754141 - 33754038
Alignment:
Q  165 gaccactctcctctttctccatccatcacctccgcgattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattatt 264  Q
    |||||||| |||  ||||||||||||||||  ||  ||||||||| | |||||||| ||| ||||| | ||| ||||||| |||||||||||||||| ||    
T  33754141 gaccactcacctacttctccatccatcaccgacgtaattactctcatccttcttcagttttgagagttatctccatctctttccacaaaccctaattgtt 33754042  T
Q  265 gtaa 268  Q
    ||||    
T  33754041 gtaa 33754038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 8433026 - 8432980
Alignment:
Q  268 atttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  8433026 atttccttcaattctgattctgatttgatgattacatgttctttagt 8432980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 23218524 - 23218461
Alignment:
Q  11 taatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaaccaagtgagaa 75  Q
    ||||||||||  ||||||||||||||| ||||  |||||||||||||||||||| ||||||||||    
T  23218524 taatatttcctattcagtctcatttcctcttcccgtttctctttcatctgagaa-caagtgagaa 23218461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 54785411 - 54785346
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| ||||||| ||||||| |  ||||||||||| |||||||||||||||| ||||    
T  54785411 atccaccaccacaccaccgccggcgagccgcaa--ccactctcctccttctccatccatcaccgccgc 54785346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 33754013 - 33753956
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacat--gttatttagttgatt 319  Q
    |||||||| |||||||||||||| |||||||||||||||||  ||| |||||||||||    
T  33754013 tgtaattttcttcaattatgattttgatttgatgattacatgagttctttagttgatt 33753956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 8433203 - 8433138
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  8433203 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 8433138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 21604322 - 21604387
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  21604322 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 21604387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 46164589 - 46164524
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  46164589 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 46164524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 47825805 - 47825870
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  47825805 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 47825870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 45143787 - 45143841
Alignment:
Q  11 taatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaac 65  Q
    ||||||||||  ||||||||||| ||| ||||  |||||||||||||||||||||    
T  45143787 taatatttcctattcagtctcatgtcctcttcccgtttctctttcatctgagaac 45143841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 45152556 - 45152610
Alignment:
Q  11 taatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaac 65  Q
    ||||||||||  ||||||||||| ||| ||||  |||||||||||||||||||||    
T  45152556 taatatttcctattcagtctcatgtcctcttcccgtttctctttcatctgagaac 45152610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 101 - 268
Target Start/End: Complemental strand, 2339049 - 2338889
Alignment:
Q  101 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcac---ctcc 197  Q
    |||||||||||||||||| || |||||||||||||||||||        |||||||||||||||  ||||||||||| |||||||||||||||   | ||    
T  2339049 atccttttcttctcccaaccaaagcaaatcgatccaccacc--------gccggtgagccgcga--ccactctcctccttctccatccatcactgccgcc 2338960  T
Q  198 gcgattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
    |||||||||||||| |||||||| ||||||||| | ||| |||||||||||||||||||||||| ||||||    
T  2338959 gcgattactctcctccttcttcagtttagagagttatctccatctctctccacaaaccctaattgttgtaa 2338889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 101 - 268
Target Start/End: Original strand, 52893315 - 52893475
Alignment:
Q  101 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc- 199  Q
    |||||||||||||||||| || ||||||| |||||||||||        |||||||||||||||   |||||||||| |||||||||||||||| ||||     
T  52893315 atccttttcttctcccaaccaaagcaaattgatccaccacc--------gccggtgagccgcgat--cactctcctccttctccatccatcaccgccgcc 52893404  T
Q  200 --gattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
      |||||||||||| |||||||| |||||| |||| ||| |||||||||||||||||||||||| ||||||    
T  52893405 gcgattactctcctccttcttcagtttagaaagctatctccatctctctccacaaaccctaattgttgtaa 52893475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 52893500 - 52893571
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttccaaccctaattgtt 335  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||  |||| |||||||||    
T  52893500 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattgtcaactctaattgtt 52893571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 21239504 - 21239575
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttccaaccctaattgtt 335  Q
    ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||  |||| |||||||||    
T  21239504 tgtaatttccttcaattctgattatgatttgatgattacatgttctttagttgattgtcaactctaattgtt 21239575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 21239407 - 21239479
Alignment:
Q  196 ccgcgattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
    ||||||| ||||||||||||||||| |||||| |||| ||| | |||||||||||||||||||||| ||||||    
T  21239407 ccgcgatcactctccttcttcttcagtttagaaagctatctccgtctctctccacaaaccctaattgttgtaa 21239479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 9456483 - 9456533
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  9456483 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 9456533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 52893249 - 52893302
Alignment:
Q  11 taatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaa 64  Q
    ||||||||||  ||||||||||||||| |||| |||||||||||||||||||||    
T  52893249 taatatttcctattcagtctcatttcctcttcctgtttctctttcatctgagaa 52893302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 2339118 - 2339055
Alignment:
Q  11 taatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaaccaagtgagaa 75  Q
    ||||||||||  ||||||||||||||| ||||  |||||||||||||||||||| ||||||||||    
T  2339118 taatatttcctattcagtctcatttcctcttcccgtttctctttcatctgagaa-caagtgagaa 2339055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 21239357 - 21239397
Alignment:
Q  101 atccttttcttctcccaagcatagcaaatcgatccaccacc 141  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  21239357 atccttttcttctcccaaccaaagcaaatcgatccaccacc 21239397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 2338864 - 2338811
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatt 319  Q
    ||||||||||||||||||||||| |||||||   |||||||||| |||| ||||||    
T  2338864 tgtaatttccttcaattatgattatgatttg--tattacatgttctttatttgatt 2338811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 9456310 - 9456375
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | ||||| |||| ||||  ||||||| ||| |||||||||||||||| ||||    
T  9456310 atccaccaccacaccactgccggcgagctgcga--ccactcttctccttctccatccatcaccgccgc 9456375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 102 - 268
Target Start/End: Complemental strand, 11400 - 11244
Alignment:
Q  102 tccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc-- 199  Q
    ||||||||||||||||| || |||||||||||||||||||        | |||||||||||||  ||||| ||||| |||||||||||||||| ||||      
T  11400 tccttttcttctcccaaccaaagcaaatcgatccaccacc--------gacggtgagccgcga--ccactttcctccttctccatccatcaccgccgccg 11311  T
Q  200 -gattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 268  Q
     |||||||||||| ||||   | ||||||||||| ||| |||||||||||||||| ||||||| ||||||    
T  11310 cgattactctcctccttc---agtttagagagctatctccatctctctccacaaatcctaattgttgtaa 11244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 11219 - 11160
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttcca 323  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  11219 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatttcca 11160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 26014536 - 26014586
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26014536 tgtaatttccttcaattctgattctgatttgatgattacatgttatttagt 26014586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 29599301 - 29599251
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  29599301 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 29599251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 6165253 - 6165193
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacc 194  Q
    ||||||||||||||| |||| ||||||||||||  ||||||||||| ||||||||||||||||    
T  6165253 atccaccaccacaccaccgctggtgagccgcga--ccactctcctccttctccatccatcacc 6165193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 16764741 - 16764681
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacc 194  Q
    ||||||||||||||| |||| ||||||||||||  ||||||||||| ||||||||||||||||    
T  16764741 atccaccaccacaccaccgctggtgagccgcga--ccactctcctccttctccatccatcacc 16764681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 324748 - 324798
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  324748 tgtaatttccttcaattctgattctgatttgatgattagatgttctttagt 324798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 26355075 - 26355125
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| ||||||    
T  26355075 tgtaacttccttcaattctgattctgatttgatgattacatgttctttagt 26355125  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 10801773 - 10801713
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacc 194  Q
    ||||||||||||||| ||||  |||||||||||  ||||||||||| ||||||||||||||||    
T  10801773 atccaccaccacaccaccgcttgtgagccgcga--ccactctcctccttctccatccatcacc 10801713  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 10801608 - 10801547
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattac--atgttatttagttgatttcca 323  Q
    |||||||  |||||||| |||||||||||||||||||||  ||||| |||||||||||||||    
T  10801608 tgtaattgtcttcaattctgattctgatttgatgattacatatgttttttagttgatttcca 10801547  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 324575 - 324640
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  324575 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 324640  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 26354901 - 26354966
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    |||||||||| |||| ||||||| || ||||||  ||||||||||| |||||||||||||||| ||||    
T  26354901 atccaccaccgcaccaccgccggcgaaccgcga--ccactctcctccttctccatccatcaccgccgc 26354966  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 29599474 - 29599409
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  29599474 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 29599409  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 16764577 - 16764520
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattac--atgttatttagttgatt 319  Q
    |||||||  |||||||| |||||||||||||||||||||  ||||| |||||||||||    
T  16764577 tgtaattgtcttcaattctgattctgatttgatgattacatatgttttttagttgatt 16764520  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 6165089 - 6165049
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacat 304  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  6165089 tgtaattgtcttcaattctgattctgatttgatgattacat 6165049  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 26014422 - 26014487
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | || || |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  26014422 atccaccaccacaccactgctggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 26014487  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 6472294 - 6472244
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  6472294 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 6472244  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 9371876 - 9371926
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  9371876 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 9371926  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 21358072 - 21358022
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  21358072 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 21358022  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 6472467 - 6472402
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  6472467 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 6472402  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 9371703 - 9371768
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  9371703 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 9371768  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 35013024 - 35012981
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgtt 307  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||    
T  35013024 tgtaatttccttcaatcctgattctgatttgataattacatgtt 35012981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 44660378 - 44660435
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttc 321  Q
    ||||||||| ||||||| ||||| |  ||| ||||||||||||| |||||||||||||    
T  44660378 tgtaatttcgttcaattctgatttttctttaatgattacatgttctttagttgatttc 44660435  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 35013198 - 35013133
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| | ||||| | |||||||  ||||||| ||| |||||||||||||||| ||||    
T  35013198 atccaccaccacaccactgccggcgggccgcga--ccactcttctccttctccatccatcaccgccgc 35013133  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 32397302 - 32397352
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 314  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  32397302 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 32397352  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 32397128 - 32397193
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 199  Q
    ||||||||||||||| ||||||| || || |||  ||||||||||| | |||||||||||||| ||||    
T  32397128 atccaccaccacaccaccgccggcgatccccga--ccactctcctcctgctccatccatcaccgccgc 32397193  T

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Target: scaffold0054 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 2768 - 2828
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacc 194  Q
    ||||||||||||||| |||| ||||||||||||  ||||||||||| ||||||||||||||||    
T  2768 atccaccaccacaccaccgctggtgagccgcga--ccactctcctccttctccatccatcacc 2828  T

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Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 2932 - 2989
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattac--atgttatttagttgatt 319  Q
    |||||||  |||||||| |||||||||||||||||||||  ||||| |||||||||||    
T  2932 tgtaattgtcttcaattctgattctgatttgatgattacatatgttttttagttgatt 2989  T

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Target: scaffold0285 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 8587 - 8528
Alignment:
Q  132 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcac 193  Q
    ||||||||||||||| |||| ||||||||||||  ||||||||||| |||||||||||||||    
T  8587 atccaccaccacaccaccgctggtgagccgcga--ccactctcctccttctccatccatcac 8528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 8423 - 8366
Alignment:
Q  264 tgtaatttccttcaattatgattctgatttgatgattac--atgttatttagttgatt 319  Q
    |||||||  |||||||| |||||||||||||||||||||  ||||| |||||||||||    
T  8423 tgtaattgtcttcaattctgattctgatttgatgattacatatgttttttagttgatt 8366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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