View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0804_low_6 (Length: 333)
Name: NF0804_low_6
Description: NF0804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0804_low_6 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0700 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 3920823 - 3920469
Alignment:
| Q |
1 |
aagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtcgatgtcatacatcaaaagtaacttcttatgaacttt |
100 |
Q |
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| T |
3920823 |
aagatattataatatagatcatatctattacatttgacattaattaaaaatcatttgatatgtcaatgacatacatcaaaagaaacttcttatgaacttt |
3920724 |
T |
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| Q |
101 |
aaaaaacgggttagttttagcag----------------------gcacaaaaaccaatagtaccttggtttgaaaaatgaatgaaagtggctcagtgtg |
178 |
Q |
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| T |
3920723 |
aaaaaacgggttagttttagcagaggggaattatgagtgaaaaatgcacaaaaaccaatagtaccttggtttgaaaaatgaatgaaagtggctcagtgtg |
3920624 |
T |
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| Q |
179 |
aatgaattaccactgagtagcaacattgaatgcactcaactactcattgttcatcgaattcaattttaactgtgaccacatcaacagcaacagctagggc |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
3920623 |
aatgaattaccactgagtagcaacattgaatgcactcaactactcattgttcatcgaattcaattttaactgtgaccacatcaacagcaacagcaactac |
3920524 |
T |
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| Q |
279 |
tttgtctgatctgagtatcgcagtctttaggtagtaaccatttatttcatctcac |
333 |
Q |
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| T |
3920523 |
tttgtctgatctgagtatcgcagtctttaggtagtaaccatttatttcatttcac |
3920469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0700 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0700
Description:
Target: scaffold0700; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 5173 - 5232
Alignment:
| Q |
5 |
tattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtc |
64 |
Q |
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| T |
5173 |
tattataacatagatcatgtctataaagtttgacattaataaaaaattatttgatatgtc |
5232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 43263896 - 43263802
Alignment:
| Q |
4 |
atattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtcgatgtcatacatcaaaagtaacttcttatgaact |
98 |
Q |
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| T |
43263896 |
atattataatatagatcatgtctacaaaatatgacattaatcatatattatttgatatggcaatgagataaatcaaaattaacgtcttatgaact |
43263802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 28117411 - 28117313
Alignment:
| Q |
1 |
aagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtcgatgtcatacatcaaaagtaacttcttatgaacttt |
100 |
Q |
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||||||||||||||||||||||| |||| |||||||||| || | ||||||||||||||| ||| || |||||||| |||| ||| ||||||||| |
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| T |
28117411 |
aagatattataatatagatcatg-ctatacaatttgacatttatcggatataatttgatatgtcaatgaaatgcatcaaaattaacgtctaatgaacttt |
28117313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 11803229 - 11803124
Alignment:
| Q |
2 |
agatattataatatagatcat-gtctattacatttgacattaattaaaaataatttgatatgtcgatgtcatacatcaaaagtaacttcttatgaacttt |
100 |
Q |
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||||||||||||||||||| | || ||| | ||||||||||||| ||||||| ||||| |||| ||| || |||||||| |||| |||||| || ||| |
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| T |
11803229 |
agatattataatatagatctttgtatataaaatttgacattaatcgaaaataagttgatttgtcaatgagatgcatcaaaattaacgtcttatcaa-ttt |
11803131 |
T |
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| Q |
101 |
aaaaaac |
107 |
Q |
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||||||| |
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| T |
11803130 |
aaaaaac |
11803124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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