View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0804_low_8 (Length: 331)

Name: NF0804_low_8
Description: NF0804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0804_low_8
NF0804_low_8
[»] chr2 (1 HSPs)
chr2 (1-254)||(7805983-7806236)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 7805983 - 7806236
Alignment:
Q  1 gcaatatgtttctccaatgcattaaaataattcacatttgatgcatctacctgagaacgagtgtgcgcaatttgtttttgaagcttcttaaaattctctt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7805983 gcaatatgtttcttcaatgcattaaaataattcacatttgatgcatctacctgagaacgagtgtgcgcaatttgtttttgaagcttcttaaaattctctt 7806082  T
Q  101 tacttcactggtgcatgtttcatgcacaattatgaagcttggatataatttgtcttcacaagaagatttccagcaattacagataaagtgatcaaaatta 200  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7806083 tacttcattgctgcatgtttcatgcacaattatgaagcttggatataatttgtcttcacaagaagatttccagcaattacagataaagtgatcaaaatta 7806182  T
Q  201 ggctcgactaattaaccaaacattttcttttgactggggatgatatctagcttc 254  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  7806183 ggctcgactaattaaccaaacattttcttttgactggagctgatatctagcttc 7806236  T

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