View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0804_low_9 (Length: 331)
Name: NF0804_low_9
Description: NF0804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0804_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 29 - 328
Target Start/End: Complemental strand, 19459061 - 19458762
Alignment:
| Q |
29 |
gctaatacttaaactataataaagcttcacgggtggaggggggcgatagaaccaaaggttcagttgagagaataaagcctcgtacagggttcggattttc |
128 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19459061 |
gctaatacttaaactataataaagcttcgcgggtggaggggggcgatagaaccaaaggttcagttgagagaataaagcctcgtacagggttcggattttc |
19458962 |
T |
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| Q |
129 |
attcgatgcagatacaataaaaaggggaggcttgtaagcctttaagaggctgctataactcagtctgtggactcaaaaacctaacactacatcatagata |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19458961 |
attcgatgcagatacaataaaaaggggaggcttgtaagcctttaagaggctgctataactcagtctgtgaactcaaaaacctaacactacatcatagata |
19458862 |
T |
|
| Q |
229 |
cacacacgcgtagagatgaattttcaggaaacaatgcattgtgtgacaagcaatttcacctaacatttctaacccaaatagcaatttcacctaacattga |
328 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19458861 |
cacacacgtgtagagatgaattttcaggaaaaaatgcattgtgtgacaagcaatttcacctaacattactaacccaaatagcaatttcacctaacattga |
19458762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 10194812 - 10194956
Alignment:
| Q |
78 |
aaccaaaggttcagttgagagaataaagcctcgtacagggttcggattttcattcgatgcagatacaataaaaaggggaggcttgtaagcctttaagagg |
177 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||| || | || |||||||||||| | |||| ||||| ||||||| |||||||||| |
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| T |
10194812 |
aaccaaagattcagttgagagaataaagcctcgtacagggtctggacattaagtcaatgcagatacaacataaagaggaggtttgtaagactttaagagg |
10194911 |
T |
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| Q |
178 |
ctgctataactcagtctgtggactcaaaaacctaacactacatca |
222 |
Q |
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||||||||||||||| ||| | |||||||||| || ||||||||| |
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| T |
10194912 |
ctgctataactcagtttgttgcctcaaaaaccaaatactacatca |
10194956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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