View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0805-10 (Length: 94)
Name: NF0805-10
Description: NF0805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0805-10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 42509160 - 42509075
Alignment:
| Q |
9 |
tacgtatattggaccacttaattgtgagctgaaggagcaatttctaaacatgctcttattttcttctttttcccacaagagagaat |
94 |
Q |
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| T |
42509160 |
tacgtatattggaccacttaattgtgagctgaaggagcaatttctaaacatgctcttattttcttctttttcccacaagagagaat |
42509075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 42518608 - 42518521
Alignment:
| Q |
9 |
tacgtatattggaccac--ttaattgtgagctgaaggagcaatttctaaacatgctcttattttcttctttttcccacaagagagaat |
94 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42518608 |
tacgtatattggaccacacttaattgtgagctgaaggagcaatttctaaacatgctcttgcattcttctttttcccacaagagagaat |
42518521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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