View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0805_high_3 (Length: 251)
Name: NF0805_high_3
Description: NF0805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0805_high_3 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 48487500 - 48487260
Alignment:
| Q |
11 |
cacagaagaagaataatcgacaaatacaaaactccaagctcagttttgaaggtgagagtagtgacactggaattagatttgtaaataagggaaaggaaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
48487500 |
cacagaagaagaataatcgacaaatacaaaactccaagctcagttttgaaggtgagagtagtgatactgtaattagatttgtaaataagggaaaggaaaa |
48487401 |
T |
|
| Q |
111 |
caaacgcgatccgaaaaaagagagtgataatggttttgatgaatttgattatgagaagcatgctaagtcgtttaagagcattaaaaagacggttaaaggg |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48487400 |
caaatgcgatccgaaaaaagagagtgataatggttttgatgaatttgattatgagaagcatgctaagtcgtttaagagcattaaaaagacggttaaaggg |
48487301 |
T |
|
| Q |
211 |
agtcgtatgttattggttaaagtggagaggggaaattgttt |
251 |
Q |
| |
|
||||| |||||||||||||||| |||||| ||||||||||| |
|
|
| T |
48487300 |
agtcgaatgttattggttaaagcggagagtggaaattgttt |
48487260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 82 times since January 2019
Visitors: 5830