View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0806_high_10 (Length: 305)

Name: NF0806_high_10
Description: NF0806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0806_high_10
NF0806_high_10
[»] chr6 (16 HSPs)
chr6 (29-305)||(7993738-7994014)
chr6 (29-180)||(6432543-6432694)
chr6 (56-205)||(7131984-7132133)
chr6 (29-212)||(6403241-6403424)
chr6 (105-238)||(6602837-6602970)
chr6 (102-205)||(19632785-19632888)
chr6 (58-239)||(6596531-6596712)
chr6 (58-214)||(6594188-6594344)
chr6 (59-205)||(6588918-6589064)
chr6 (107-211)||(6426854-6426958)
chr6 (63-127)||(8913659-8913723)
chr6 (29-195)||(6423594-6423760)
chr6 (140-233)||(6410345-6410438)
chr6 (144-205)||(10579426-10579487)
chr6 (140-210)||(14821052-14821122)
chr6 (140-180)||(6395238-6395278)
[»] chr1 (6 HSPs)
chr1 (29-235)||(33160844-33161050)
chr1 (29-205)||(29658509-29658685)
chr1 (29-205)||(29691024-29691200)
chr1 (29-205)||(29718536-29718712)
chr1 (29-203)||(30827467-30827641)
chr1 (96-205)||(19468128-19468237)
[»] chr4 (6 HSPs)
chr4 (83-212)||(55908335-55908464)
chr4 (96-285)||(547203-547392)
chr4 (59-211)||(3438235-3438387)
chr4 (96-166)||(1600810-1600880)
chr4 (55-205)||(53761367-53761517)
chr4 (59-128)||(21833970-21834039)
[»] chr2 (1 HSPs)
chr2 (83-212)||(1037271-1037400)
[»] chr5 (4 HSPs)
chr5 (55-205)||(20477670-20477814)
chr5 (59-206)||(28532074-28532221)
chr5 (58-206)||(41889136-41889284)
chr5 (63-127)||(12846038-12846102)
[»] chr8 (1 HSPs)
chr8 (83-211)||(17627666-17627794)
[»] scaffold0262 (1 HSPs)
scaffold0262 (75-212)||(280-417)
[»] chr7 (4 HSPs)
chr7 (96-202)||(15091774-15091880)
chr7 (99-205)||(10169762-10169868)
chr7 (99-205)||(10177287-10177393)
chr7 (59-127)||(10615035-10615103)
[»] chr3 (2 HSPs)
chr3 (65-202)||(514317-514454)
chr3 (58-205)||(51764031-51764178)


Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 29 - 305
Target Start/End: Original strand, 7993738 - 7994014
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7993738 atacaacatttagatcttaatggtatttattttctgaatgatctacatgttgctgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 7993837  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggag 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7993838 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggag 7993937  T
Q  229 tgtagagaatttcaatttcttgatggattttcctccaagccctcaattgaagtctctttgtttagctctctgtcaac 305  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7993938 tgtagagaatttcaatttcttgacggattttcctccaagccctcaattgaagtctctttgtttagctctctgtcaac 7994014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 6432694 - 6432543
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    ||||||||||| ||||||  |||  || ||||||| ||||||| ||||||||||| || ||| ||  |||||| |||||||||||||||||||||||||     
T  6432694 atacaacatttggatctttgtggacttcattttctaaatgatcaacatgttgccgggtcgtctttgtttcttgctgatttggtgtctataaaccttagta 6432595  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtcc 180  Q
    | |||||    ||||||||||||||| |||||||||||||| ||||||||||    
T  6432594 attgtcgatatctcacagaatcagccctgttttcactcgttggaaactgtcc 6432543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 205
Target Start/End: Complemental strand, 7132133 - 7131984
Alignment:
Q  56 tattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagcct 155  Q
    |||||||||||||||  ||||||| | |||||||| |   ||||| |||| ||  ||||| |||||||| |||| ||| ||||||||||||||| |||||    
T  7132133 tattttctgaatgatgaacatgtttctgagttgtcttggtttcttcgtgacttactgtctgtaaaccttcgtgactgttggatgctcacagaattagcct 7132034  T
Q  156 tgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
    ||| |||||||||||||||||| || |||||| ||||  |||||||||||    
T  7132033 tgtattcactcgttagaaactgcccttcacttagtgagttcaaaatggaa 7131984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 212
Target Start/End: Complemental strand, 6403424 - 6403241
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    ||||||||||| |||||||||  || |||||||||||||||| |||||||||| ||||| || ||  ||||   ||| ||||||||||||||||||| |     
T  6403424 atacaacatttggatcttaataacagttattttctgaatgatttacatgttgctgagttttctttgtttctacatgagttggtgtctataaaccttaatt 6403325  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaa 212  Q
     ||||  |||||| | | ||||| |||||||||||||| ||   || ||||| |||||  |||||||||||||||||| |||||    
T  6403324 catgtttgatgcttagaaaatcaaccttgttttcactcctttcgaattgtccttcactcagtgaaatcaaaatggaacacacaa 6403241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 6602837 - 6602970
Alignment:
Q  105 atttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatgga 204  Q
    |||||||||||||||||||||||||||||      |||||||||| | ||||||||||||| |||| ||||||||| |||||| |||| |||||||||||    
T  6602837 atttggtgtctataaaccttagtgaatgttcctacctcacagaattatccttgttttcacttgttaaaaactgtccttcacttagtgagatcaaaatgga 6602936  T
Q  205 acgcacaaatgttgggatagggagtgtagagaat 238  Q
    |  |||| || |||||| || || ||||||||||    
T  6602937 agacacagatattgggaaagagaatgtagagaat 6602970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 205
Target Start/End: Complemental strand, 19632888 - 19632785
Alignment:
Q  102 gtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaat 201  Q
    |||||||||||||||| ||||||| ||| ||| ||| ||||||||||| | | |||||||| |||||||| || ||||| |||||| |||| ||||||||    
T  19632888 gtgatttggtgtctatcaaccttaatgactgttggaagctcacagaattatcattgttttcgctcgttagtaattgtccttcacttagtgagatcaaaat 19632789  T
Q  202 ggaa 205  Q
    ||||    
T  19632788 ggaa 19632785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 239
Target Start/End: Original strand, 6596531 - 6596712
Alignment:
Q  58 ttttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttg 157  Q
    |||||| ||||||  ||||||||| | ||| || ||  |||||||||||||||| ||||||||||||| | | |||   | |||||||||||||||| ||    
T  6596531 ttttcttaatgatacacatgttgctgggttctctttgtttcttggtgatttggtttctataaaccttaatcattgttcaaggctcacagaatcagccgtg 6596630  T
Q  158 ttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatt 239  Q
    ||||| ||||| ||||| ||||| || ||| |||| ||||||||| ||  ||||  | ||||||  | ||||||||||||||    
T  6596631 ttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatgcaaaacacagctattgggacggagagtgtagagaatt 6596712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 214
Target Start/End: Original strand, 6594188 - 6594344
Alignment:
Q  58 ttttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttg 157  Q
    |||||||||||||| |||||||||||||||||| ||  |||||| || ||||  ||| || |||||||||   ||       |||||||||||||| |||    
T  6594188 ttttctgaatgatcaacatgttgccgagttgtctttgtttcttgctggtttgaagtccattaaccttagttcttgcaaccatctcacagaatcagctttg 6594287  T
Q  158 ttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaat 214  Q
    |||||||| |||||||  ||||| | |||| |||| ||||||||||| |||||||||    
T  6594288 ttttcacttgttagaagttgtcctttacttagtgatatcaaaatggagcgcacaaat 6594344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 205
Target Start/End: Original strand, 6588918 - 6589064
Alignment:
Q  59 tttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgt 158  Q
    ||||||||||||| |||||||| ||| ||||| |   |||||||||||||||||||  ||||||||||| | ||  | | | ||||||||||||| ||||    
T  6588918 tttctgaatgatcaacatgttgtcgaattgtcttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgt 6589017  T
Q  159 tttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
    || |||| | ||| || ||||| | |||| |||| |||| |||||||    
T  6589018 ttgcacttgctaggaagtgtcctttacttggtgagatcacaatggaa 6589064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 6426958 - 6426854
Alignment:
Q  107 ttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaac 206  Q
    ||||||||||||||||||||||  ||||     ||||||||| || | ||||||||||| |||||||||||||| ||| || |||| || |||||||||     
T  6426958 ttggtgtctataaaccttagtggttgtcatcatctcacagaaacaacattgttttcacttgttagaaactgtccttcaattagtgagattaaaatggaag 6426859  T
Q  207 gcaca 211  Q
    |||||    
T  6426858 gcaca 6426854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 8913659 - 8913723
Alignment:
Q  63 tgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagt 127  Q
    ||||||||| |||||||| | ||||||| ||  |||||||| |||||||||||||||||||||||    
T  8913659 tgaatgatcaacatgttgtcaagttgtctttgtttcttggtaatttggtgtctataaaccttagt 8913723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 6423760 - 6423594
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    |||||||||||  ||||| |  |||||||||||||||| |||| ||||||||  ||||| || ||   | | ||| |||| |||||||||| ||| | ||    
T  6423760 atacaacatttgaatcttgactgcatttattttctgaaggatcaacatgttgttgagttatctttttatatgggtaatttagtgtctataagcctcaatg 6423661  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaat 195  Q
    | |||    | ||| ||||| || | |||||||||||||||||||||||||| |||||| |||||||    
T  6423660 attgttatcttctcgcagaaacaactttgttttcactcgttagaaactgtccttcacttagtgaaat 6423594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 6410438 - 6410345
Alignment:
Q  140 ctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtag 233  Q
    |||||||||| ||||  |||||||||||||||||| ||||| ||||||  ||| ||||||||| || | |||| | |||||| || ||||||||    
T  6410438 ctcacagaattagcccagttttcactcgttagaaattgtccttcacttaatgagatcaaaatgaaaagaacaagtattgggaaagagagtgtag 6410345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 10579426 - 10579487
Alignment:
Q  144 cagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
    ||||||||||||||||||| ||||| ||||| ||||| || ||| |||| ||||||||||||    
T  10579426 cagaatcagccttgttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatggaa 10579487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 14821122 - 14821052
Alignment:
Q  140 ctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcac 210  Q
    ||||||||| || ||||||||||||||||||| ||||||   ||||||  |||| ||||||||||| ||||    
T  14821122 ctcacagaaacaaccttgttttcactcgttaggaactgttattcacttattgaagtcaaaatggaatgcac 14821052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 6395278 - 6395238
Alignment:
Q  140 ctcacagaatcagccttgttttcactcgttagaaactgtcc 180  Q
    ||||||||| || |||| |||||||||||||||||||||||    
T  6395278 ctcacagaaacaacctttttttcactcgttagaaactgtcc 6395238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 29 - 235
Target Start/End: Complemental strand, 33161050 - 33160844
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    |||||| |||| ||||| |||  || ||||||||||||||||| ||||||||||||||| || ||  |||||| || |||||||||||||||||||| ||    
T  33161050 atacaatatttggatctaaatcacacttattttctgaatgatcaacatgttgccgagttctctttgtttcttgctgctttggtgtctataaaccttaatg 33160951  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggag 228  Q
     |||| ||| ||||||||||||||| ||||||||||| |||| ||||||||| |||||| |||| |||||||||||| |||||| | |||||| || |||    
T  33160950 gatgttggaggctcacagaatcagcattgttttcacttgttacaaactgtccttcacttagtgacatcaaaatggaatgcacaactattgggaaagagag 33160851  T
Q  229 tgtagag 235  Q
    | |||||    
T  33160850 tatagag 33160844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 205
Target Start/End: Original strand, 29658509 - 29658685
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    ||||||||||| ||||||| | ||| | | ||||| ||||||| ||||||||||||||| || ||  |||||| | ||||||||||||||||||||| ||    
T  29658509 atacaacatttggatcttagtcgcactaagtttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactg 29658608  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
     |||| ||| ||| ||||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29658609 gatgttggaagctgacagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29658685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 205
Target Start/End: Original strand, 29691024 - 29691200
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    ||||||||||| ||||||| |  || | ||||||| ||||||| ||||||||||||||| || ||  |||||| | ||||||||||||||||||||| ||    
T  29691024 atacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactg 29691123  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
     |||| ||| ||| ||||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29691124 gatgttggaagctgacagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29691200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 205
Target Start/End: Original strand, 29718536 - 29718712
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    ||||||||||| ||||||| |  || | ||||||| ||||||| ||||||||||||||| || ||  |||||| | ||||||||||||||||||||| ||    
T  29718536 atacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactg 29718635  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
     |||| ||| ||| ||||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29718636 gatgttggaagctgacagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29718712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 30827641 - 30827467
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    ||||||||||| ||||||| |  || || |||||| ||||||| |||||||||||| || || || ||||||  | |||| |||||||||||||||| |     
T  30827641 atacaacatttggatcttagtttcacttgttttctcaatgatcaacatgttgccgacttctctttgcttcttcctcatttagtgtctataaaccttactc 30827542  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatgg 203  Q
     |||| ||| ||| ||||||||||| |||||||| ||||||| ||| ||||| ||||||  ||| ||||||||||    
T  30827541 gatgttggaagctaacagaatcagctttgttttcgctcgttacaaattgtccttcacttactgacatcaaaatgg 30827467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 19468128 - 19468237
Alignment:
Q  96 ttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaat 195  Q
    ||||||||||||| ||||||||||||||||||||||||  |   |||||| | ||| |||||||| |||||||||| || ||||| |||||| |||| ||    
T  19468128 ttcttggtgatttagtgtctataaaccttagtgaatgtatggacctcacatattcaaccttgtttacactcgttaggaattgtccttcacttagtgagat 19468227  T
Q  196 caaaatggaa 205  Q
    ||||||||||    
T  19468228 caaaatggaa 19468237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 55908335 - 55908464
Alignment:
Q  83 gagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccat 182  Q
    |||||||| ||  |||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||| ||||| |||||||||| || ||||| |    
T  55908335 gagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcactcgttaggaattgtcctt 55908434  T
Q  183 cacttcgtgaaatcaaaatggaacgcacaa 212  Q
    |||||  |||  |||||||||||| |||||    
T  55908435 cacttattgaggtcaaaatggaacacacaa 55908464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 285
Target Start/End: Complemental strand, 547392 - 547203
Alignment:
Q  96 ttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaat 195  Q
    ||||||||||||||| || ||||||||||||| | ||| ||   |||||| | | |||||||||| |||||||||| || ||| | |||||| |||| ||    
T  547392 ttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagat 547293  T
Q  196 caaaatggaacgcacaaatgttgggatagggagtgtagagaatttcaatttcttgatggattttcctccaagccctcaattgaagtctct 285  Q
    ||||||||||| ||||||  ||||||| | ||||||||||||||  ||||  || | |||||||  |  |||||||||||||||||||||    
T  547292 caaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctct 547203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 59 - 211
Target Start/End: Original strand, 3438235 - 3438387
Alignment:
Q  59 tttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgt 158  Q
    ||||| |||||||  ||||||| | |||||||  |  ||| |||||||||||||||||||||||||||||| |||  |||||||||| ||| |||||| |    
T  3438235 tttctaaatgatcgccatgttgtcaagttgtccatgtttcatggtgatttggtgtctataaaccttagtgattgttcgatgctcacaaaattagccttat 3438334  T
Q  159 tttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcaca 211  Q
    |||||||| |||| || ||||| |||||| |||| || ||||||||| |||||    
T  3438335 tttcactcattagtaattgtccttcacttagtgagataaaaatggaatgcaca 3438387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 1600880 - 1600810
Alignment:
Q  96 ttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactc 166  Q
    |||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| |||||    
T  1600880 ttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 1600810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 205
Target Start/End: Original strand, 53761367 - 53761517
Alignment:
Q  55 ttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagcc 154  Q
    ||||||||||||  ||| ||||||||   | ||||| || |||||||||||||||||||| ||||||||||||   |||   | | ||||| |||  |||    
T  53761367 ttattttctgaacaatcaacatgttgtaaatttgtctttgcttcttggtgatttggtgtccataaaccttagtcgttgttataagatcacaaaattggcc 53761466  T
Q  155 ttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
    |||||| |||| | || ||||||||| |||||| |||| ||||||||||||    
T  53761467 ttgtttgcacttgctaaaaactgtccttcacttagtgagatcaaaatggaa 53761517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 21833970 - 21834039
Alignment:
Q  59 tttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    ||||||||||||| |||||||| | ||||||  | | |||||||||||||| | || |||||||||||||    
T  21833970 tttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtg 21834039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 1037271 - 1037400
Alignment:
Q  83 gagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccat 182  Q
    |||||||| ||  |||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||| ||||| |||||||||| || ||||| |    
T  1037271 gagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcactcgttaggaattgtcctt 1037370  T
Q  183 cacttcgtgaaatcaaaatggaacgcacaa 212  Q
    |||||  |||  |||||||||||| |||||    
T  1037371 cacttattgaggtcaaaatggaacacacaa 1037400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 205
Target Start/End: Original strand, 20477670 - 20477814
Alignment:
Q  55 ttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagcc 154  Q
    ||||||||||||||||| || ||||||||||||||      ||||||  ||||||||||||||||| |||||||| |||  |   |||||||||| ||||    
T  20477670 ttattttctgaatgatcaacttgttgccgagttgt------ttcttgcggatttggtgtctataaatcttagtgattgtttgcatctcacagaattagcc 20477763  T
Q  155 ttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
    |||| |||||| |||||||||||||| |||||| |||| ||||||||||||    
T  20477764 ttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaa 20477814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 28532221 - 28532074
Alignment:
Q  59 tttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgt 158  Q
    ||||||||||||| |||||||  | ||||||| |   |||||||||||||| |||| || ||||||||| | |||   | ||| ||||||||| | ||||    
T  28532221 tttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccatcaaccttagtaattgtgataagctaacagaatcatctttgt 28532122  T
Q  159 tttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaac 206  Q
    || |||||| ||| |||||||| | |||| |||| |||| ||||||||    
T  28532121 ttgcactcgctaggaactgtcctttacttggtgagatcacaatggaac 28532074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 206
Target Start/End: Original strand, 41889136 - 41889284
Alignment:
Q  58 ttttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttg 157  Q
    |||||||||| ||  ||||||||  |||||||| | | |||||||||||||||| ||||||||| | | | | |||  ||| |||||||||||||| ||     
T  41889136 ttttctgaatcataaacatgttgtggagttgtcttcatttcttggtgatttggtatctataaacttgaatcattgttcgatactcacagaatcagcattc 41889235  T
Q  158 ttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaac 206  Q
    ||| ||||  |||  || ||||| |||||| |||  |||||||||||||    
T  41889236 tttgcacttcttaagaattgtccttcactttgtgttatcaaaatggaac 41889284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 12846102 - 12846038
Alignment:
Q  63 tgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagt 127  Q
    ||||||||| |||||||||  |||| || || ||||||||||||||| | ||||||||| |||||    
T  12846102 tgaatgatcaacatgttgctaagttatctttgcttcttggtgatttgatttctataaacgttagt 12846038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 83 - 211
Target Start/End: Original strand, 17627666 - 17627794
Alignment:
Q  83 gagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccat 182  Q
    |||||||| | | |||||||| ||||||||||| ||||||||||| | ||||||||||||   |||||||||||||||||||||||||| || ||||| |    
T  17627666 gagttgtcttcatttcttggtaatttggtgtctgtaaaccttagttattgtcggatgctcgacgaatcagccttgttttcactcgttagtaaatgtcctt 17627765  T
Q  183 cacttcgtgaaatcaaaatggaacgcaca 211  Q
    |||||  ||| || ||||||||| |||||    
T  17627766 cacttaatgagataaaaatggaatgcaca 17627794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 75 - 212
Target Start/End: Complemental strand, 417 - 280
Alignment:
Q  75 atgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaa 174  Q
    ||||||| |||||||| ||  ||||||| ||||||||||||||||| |||||||||||| | ||||||||| | ||| || ||||| |||||||||| ||    
T  417 atgttgcagagttgtctttgtttcttggcgatttggtgtctataaatcttagtgaatgtagcatgctcacatactcaaccatgtttgcactcgttaggaa 318  T
Q  175 ctgtccatcacttcgtgaaatcaaaatggaacgcacaa 212  Q
     | ||| ||||||  ||| ||||||||||||| |||||    
T  317 ttatccttcacttattgagatcaaaatggaacacacaa 280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 15091774 - 15091880
Alignment:
Q  96 ttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaat 195  Q
    ||||| || ||||||||||||||||||||| ||  ||||| |  ||||||||| || ||||||||||||||| |||||||||||| || |||  ||||||    
T  15091774 ttcttagtaatttggtgtctataaaccttaatgcttgtcgtaatctcacagaaacaaccttgttttcactcggtagaaactgtccttcgcttattgaaat 15091873  T
Q  196 caaaatg 202  Q
    |||||||    
T  15091874 caaaatg 15091880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 10169762 - 10169868
Alignment:
Q  99 ttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaa 198  Q
    |||||||||| |||||| ||||||||||| |||||  |  | ||||| | ||| |||||||| |||||||||| || ||||| |||||| |||| |||||    
T  10169762 ttggtgatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgcactcgttaggaattgtccttcacttagtgagatcaa 10169861  T
Q  199 aatggaa 205  Q
    |||||||    
T  10169862 aatggaa 10169868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 10177287 - 10177393
Alignment:
Q  99 ttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaa 198  Q
    |||||||||| |||||| ||||||||||| |||||  |  | ||||| | ||| |||||||| |||||||||| || ||||| |||||| |||| |||||    
T  10177287 ttggtgatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgcactcgttaggaattgtccttcacttagtgagatcaa 10177386  T
Q  199 aatggaa 205  Q
    |||||||    
T  10177387 aatggaa 10177393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 10615103 - 10615035
Alignment:
Q  59 tttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagt 127  Q
    ||||||||||||| |||||||| | | ||||| | | |||||||||||||| |||| ||||||||||||    
T  10615103 tttctgaatgatcaacatgttgtccaattgtcttcatttcttggtgatttgatgtccataaaccttagt 10615035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 202
Target Start/End: Original strand, 514317 - 514454
Alignment:
Q  65 aatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcac 164  Q
    ||||||| ||||||||  || ||||||||  |||||||| ||||| ||||||||||| | ||  |||||   ||||||||| | | | |||||||| |||    
T  514317 aatgatcaacatgttgtggatttgtcattgtttcttggtcatttgttgtctataaacttgagcaaatgttcaatgctcacacatttatccttgtttgcac 514416  T
Q  165 tcgttagaaactgtccatcacttcgtgaaatcaaaatg 202  Q
    | ||||  |||||||| |||||| |||| |||||||||    
T  514417 ttgttaagaactgtccttcacttagtgagatcaaaatg 514454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 205
Target Start/End: Original strand, 51764031 - 51764178
Alignment:
Q  58 ttttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttg 157  Q
    ||||||||||||| |||||||||   | ||||| ||  ||||| || |||||||||| |||||||||||||  ||||  | ||||||  |||||||||||    
T  51764031 ttttctgaatgatatacatgttgtaaatttgtctttgtttcttagtaatttggtgtccataaaccttagtggttgtcctaagctcaccaaatcagccttg 51764130  T
Q  158 ttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
     || | || | |||  | ||||| |||||| |||| ||||||||||||    
T  51764131 cttactcttgctaggtattgtccttcacttggtgagatcaaaatggaa 51764178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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