View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0806_high_3 (Length: 459)
Name: NF0806_high_3
Description: NF0806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0806_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 13 - 452
Target Start/End: Complemental strand, 43456193 - 43455754
Alignment:
| Q |
13 |
actatggtacgaacatccagaaagttaatatcaaagaagctcaaataatttctatgatttagaattcaatatatcatgaaacctgatgtttctagcaaga |
112 |
Q |
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| T |
43456193 |
actatggtacgaacatccagaaagttaatatcaaagaagctcaaataatttctatgatttagaattcaatatatcatgaaacctgatgtttctagcaaga |
43456094 |
T |
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| Q |
113 |
attaagtatttatatatacacacaaaccatatatgtgtgagatacctttatagcagttccatccaaggaagagccagctgcatatataagttcaccatga |
212 |
Q |
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| T |
43456093 |
attaagtatttatatatacacacaaaccatatatgtgtgagatacctttatagcagttccatccaaggaagagccagctgcatatataagttcaccatga |
43455994 |
T |
|
| Q |
213 |
acttgcagtgcatgaataggatatgctttcccaagtaatcttttagaaccactttgaatattactgatagttccagtggccaaatgtatctcctgaaata |
312 |
Q |
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| T |
43455993 |
acttgcagtgcatgaataggatatgctttcccaagtaatcttttagaaccactttgaatattactgatagttccagtggccaaatgtatctcctgaaata |
43455894 |
T |
|
| Q |
313 |
tgacaatattattatcacaaatatgtcgagataacatcacatactcaagttgagatagcatcacattggatttaggctatgtcgtacttcttaaaacttg |
412 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43455893 |
tgacaataatattatcacaaatatgtcgagataacatcacatactcaagttgagatagcatcacattggatttaggctatgtcgtacttcttaaaacttg |
43455794 |
T |
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| Q |
413 |
atacctgaacactactgtcgtggcatccacagtataatct |
452 |
Q |
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| T |
43455793 |
atacctgaacactactgtcgtggcatccacagtataatct |
43455754 |
T |
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