View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0806_high_4 (Length: 445)

Name: NF0806_high_4
Description: NF0806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0806_high_4
NF0806_high_4
[»] chr6 (11 HSPs)
chr6 (100-238)||(7994320-7994458)
chr6 (303-440)||(7994536-7994673)
chr6 (95-234)||(6589456-6589595)
chr6 (94-232)||(19632268-19632406)
chr6 (104-234)||(6394691-6394821)
chr6 (95-213)||(6594739-6594857)
chr6 (110-238)||(6423040-6423168)
chr6 (104-213)||(6402705-6402817)
chr6 (104-152)||(10579879-10579927)
chr6 (95-202)||(14820552-14820659)
chr6 (106-142)||(6603346-6603382)
[»] chr7 (3 HSPs)
chr7 (105-234)||(15092294-15092423)
chr7 (106-147)||(10614507-10614548)
chr7 (101-165)||(15106486-15106550)
[»] chr4 (4 HSPs)
chr4 (95-213)||(21834439-21834557)
chr4 (95-149)||(644743-644797)
chr4 (95-140)||(53761902-53761947)
chr4 (110-142)||(7307779-7307811)
[»] scaffold0041 (1 HSPs)
scaffold0041 (104-160)||(39085-39141)
[»] chr1 (1 HSPs)
chr1 (104-155)||(7554394-7554445)
[»] chr8 (1 HSPs)
chr8 (104-142)||(27922427-27922465)
[»] chr2 (1 HSPs)
chr2 (104-149)||(45245227-45245272)
[»] chr5 (1 HSPs)
chr5 (104-140)||(32267396-32267432)
[»] chr3 (1 HSPs)
chr3 (106-134)||(51121037-51121065)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 7994320 - 7994458
Alignment:
Q  100 gaggagggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggattttcatataagtgacaaaaatagggaactcttctcgc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7994320 gaggagggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggattttcatataagtgacaaaaatagggaactcttctcgc 7994419  T
Q  200 gtcacggatgccttatctgttagtattctgaaatttcta 238  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7994420 gtcacggatgccttatctgttagtattctgaaatttcta 7994458  T

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Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 303 - 440
Target Start/End: Original strand, 7994536 - 7994673
Alignment:
Q  303 attcattcattcttaccataaaaacaattcaaggtccagtatgcggttttgtggcaattatctattttcaatcattgttgaacaccgacacatgtcgtac 402  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7994536 attcattcattcttaccataaaaacaattcaaagtccagtatgtggttttgtggcaattatctattttcaatcattgttgaacactgacacatgtcgtac 7994635  T
Q  403 actcaaacacgcgtccgaatgaaagtgtctgtgctgct 440  Q
    ||||||||| |||| |||||||||||||| ||||||||    
T  7994636 actcaaacatgcgttcgaatgaaagtgtccgtgctgct 7994673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 95 - 234
Target Start/End: Original strand, 6589456 - 6589595
Alignment:
Q  95 tcacggaggagggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggattttcatataagtgacaaaaatagggaactctt 194  Q
    |||||||||||||||||||||||||||||||||||||||| | |||  ||||||||||| | |||||| ||||| |||||||||||| ||||||| ||||    
T  6589456 tcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagatttatctgggggatattcatttaagtgacaaaactagggaaatctt 6589555  T
Q  195 ctcgcgtcacggatgccttatctgttagtattctgaaatt 234  Q
    ||| | ||| ||||||| | | |  |||||||||||||||    
T  6589556 ctcccatcatggatgccatctttactagtattctgaaatt 6589595  T

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Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 94 - 232
Target Start/End: Complemental strand, 19632406 - 19632268
Alignment:
Q  94 atcacggaggagggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggattttcatataagtgacaaaaatagggaactct 193  Q
    ||||| ||| ||||||||||||| ||||||||||||||||  |||||||| ||||||||||| |||||| |||||  ||||||||||| |||| ||||||    
T  19632406 atcacagagaagggagtgaaacacgtggtagaaaactgcaaacaactgaaggagatttatttgggggatattcattcaagtgacaaaactaggaaactct 19632307  T
Q  194 tctcgcgtcacggatgccttatctgttagtattctgaaa 232  Q
     || |||||| ||||||||| | || |||||||| ||||    
T  19632306 gcttgcgtcatggatgccttctttgctagtattccgaaa 19632268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 104 - 234
Target Start/End: Complemental strand, 6394821 - 6394691
Alignment:
Q  104 agggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggattttcatataagtgacaaaaatagggaactcttctcgcgtca 203  Q
    |||| ||| |||||||||||||||||||||| ||| ||| ||||||| |||| |||||| || || |||||||| |||||||||||||  | | |||||     
T  6394821 agggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttgggggatattgatgtaagtgacgaaaatagggaacttctattgcgtcg 6394722  T
Q  204 cggatgccttatctgttagtattctgaaatt 234  Q
     ||||||| ||| || |||||||||||||||    
T  6394721 tggatgccgtatttgctagtattctgaaatt 6394691  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 6594739 - 6594857
Alignment:
Q  95 tcacggaggagggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggattttcatataagtgacaaaaatagggaactctt 194  Q
    |||| ||||||||||  ||||||||||||||||||||||| ||| ||| ||| || |||||  ||| || |||| |||||||| ||| ||||||||||||    
T  6594739 tcacagaggagggagccaaacatgtggtagaaaactgcacacaattgagagaaatgtatttgaggggttgtcatttaagtgacgaaattagggaactctt 6594838  T
Q  195 ctcgcgtcacggatgcctt 213  Q
    ||||||||  |||||||||    
T  6594839 ctcgcgtcggggatgcctt 6594857  T

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Target: chr6; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 238
Target Start/End: Complemental strand, 6423168 - 6423040
Alignment:
Q  110 tgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggattttcatataagtgacaaaaatagggaactcttctcgcgtcacggatg 209  Q
    |||||| |||||||  ||||||||| ||| ||| |||||||||||| || ||||||||| ||||||||||||||| | ||||| ||| |  ||  |||||    
T  6423168 tgaaacgtgtggtattaaactgcacacaattgagagagatttatttgggagattttcatgtaagtgacaaaaataagaaactcatcttggatcgtggatg 6423069  T
Q  210 ccttatctgttagtattctgaaatttcta 238  Q
    |||| | || |||||||||||||||||||    
T  6423068 ccttctttgctagtattctgaaatttcta 6423040  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 213
Target Start/End: Complemental strand, 6402817 - 6402705
Alignment:
Q  104 agggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttagggg---attttcatataagtgacaaaaatagggaactcttctcgcg 200  Q
    |||||| |||||||||| |||||||||| || ||||||| ||||||||||||  |||    ||||||| ||| |||||||| ||||||||||||| ||||    
T  6402817 agggagcgaaacatgtgatagaaaactgtacacaactgagagagatttatttgagggtttgttttcatttaactgacaaaactagggaactcttcacgcg 6402718  T
Q  201 tcacggatgcctt 213  Q
    ||  |||||||||    
T  6402717 tcgtggatgcctt 6402705  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 10579879 - 10579927
Alignment:
Q  104 agggagtgaaacatgtggtagaaaactgcacgcaactgaaagagattta 152  Q
    ||||||| ||||||||||||||||||||||| ||||| | |||||||||    
T  10579879 agggagttaaacatgtggtagaaaactgcacacaacttagagagattta 10579927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 202
Target Start/End: Complemental strand, 14820659 - 14820552
Alignment:
Q  95 tcacggaggagggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggattttcatataagtgacaaaaatagggaactctt 194  Q
    |||| ||| |||| ||||||||||||||| |||||||||| || |||| ||||||| |||| | ||  |||||| |||||  ||||| |||| ||||| |    
T  14820659 tcacagagaagggtgtgaaacatgtggtaaaaaactgcacacagctgagagagattaatttggcggggtttcatttaagtctcaaaattaggaaactcat 14820560  T
Q  195 ctcgcgtc 202  Q
     |||||||    
T  14820559 atcgcgtc 14820552  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 6603346 - 6603382
Alignment:
Q  106 ggagtgaaacatgtggtagaaaactgcacgcaactga 142  Q
    ||||||||||||||||||||||||||||  |||||||    
T  6603346 ggagtgaaacatgtggtagaaaactgcaaacaactga 6603382  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 105 - 234
Target Start/End: Original strand, 15092294 - 15092423
Alignment:
Q  105 gggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggattttcatataagtgacaaaaatagggaactcttctcgcgtcac 204  Q
    |||||||||||||||| ||||||||||||| ||| ||| ||||||| ||||  || || | ||| |||||||||||| |||| |||| ||||||||||      
T  15092294 gggagtgaaacatgtgctagaaaactgcacacaattgagagagattaatttgcggtatatccatgtaagtgacaaaactaggaaactattctcgcgtcgt 15092393  T
Q  205 ggatgccttatctgttagtattctgaaatt 234  Q
    ||||||| ||| || |||||||||||||||    
T  15092394 ggatgccatatttgctagtattctgaaatt 15092423  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 10614548 - 10614507
Alignment:
Q  106 ggagtgaaacatgtggtagaaaactgcacgcaactgaaagag 147  Q
    |||||||||||||||||||||||||||| |||| ||| ||||    
T  10614548 ggagtgaaacatgtggtagaaaactgcatgcaattgagagag 10614507  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 15106486 - 15106550
Alignment:
Q  101 aggagggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggatttt 165  Q
    ||||||||||||||  || ||||||||||||||  ||||||| |||||||| ||| ||| |||||    
T  15106486 aggagggagtgaaatgtgcggtagaaaactgcatacaactgagagagatttgtttggggtatttt 15106550  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 21834439 - 21834557
Alignment:
Q  95 tcacggaggagggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggattttcatataagtgacaaaaatagggaactctt 194  Q
    |||| ||| ||||| |||||||| |||||||||  || || ||||||| ||| ||| |||| |||||||| ||| |||||||| |||| ||| || ||||    
T  21834439 tcacagagaagggaatgaaacatatggtagaaagatgtacacaactgagagaaattaatttgggggatttgcatttaagtgacgaaaagaggaaattctt 21834538  T
Q  195 ctcgcgtcacggatgcctt 213  Q
    ||||||||  |||||||||    
T  21834539 ctcgcgtcgtggatgcctt 21834557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 644797 - 644743
Alignment:
Q  95 tcacggaggagggagtgaaacatgtggtagaaaactgcacgcaactgaaagagat 149  Q
    |||||||| | ||||||||||||||||| ||||| ||||| ||||||| ||||||    
T  644797 tcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagat 644743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 53761902 - 53761947
Alignment:
Q  95 tcacggaggagggagtgaaacatgtggtagaaaactgcacgcaact 140  Q
    |||||||  |||||||||||||||||| |||||||||||| |||||    
T  53761902 tcacggacaagggagtgaaacatgtggaagaaaactgcacacaact 53761947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 7307811 - 7307779
Alignment:
Q  110 tgaaacatgtggtagaaaactgcacgcaactga 142  Q
    |||| ||||||||||||||||||||||||||||    
T  7307811 tgaagcatgtggtagaaaactgcacgcaactga 7307779  T

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Target: scaffold0041 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 39141 - 39085
Alignment:
Q  104 agggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttagggg 160  Q
    |||||||||||||||||||| | |||||||||||||||| ||||||| ||| |||||    
T  39141 agggagtgaaacatgtggtaaacaactgcacgcaactgagagagattaattgagggg 39085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 7554445 - 7554394
Alignment:
Q  104 agggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttattt 155  Q
    |||||||||| |||||||||||||||||||||| ||| ||||||||| ||||    
T  7554445 agggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaattt 7554394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 27922465 - 27922427
Alignment:
Q  104 agggagtgaaacatgtggtagaaaactgcacgcaactga 142  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  27922465 agggagtgaaccatgtggtagaaaactgcactcaactga 27922427  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 45245227 - 45245272
Alignment:
Q  104 agggagtgaaacatgtggtagaaaactgcacgcaactgaaagagat 149  Q
    ||||||||||||||||||||||||| ||||| ||||| | ||||||    
T  45245227 agggagtgaaacatgtggtagaaaattgcacacaacttacagagat 45245272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 32267432 - 32267396
Alignment:
Q  104 agggagtgaaacatgtggtagaaaactgcacgcaact 140  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  32267432 agggagtgaagcatgtagtagaaaactgcacgcaact 32267396  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 51121037 - 51121065
Alignment:
Q  106 ggagtgaaacatgtggtagaaaactgcac 134  Q
    |||||||||||||||||||||||||||||    
T  51121037 ggagtgaaacatgtggtagaaaactgcac 51121065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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