View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0806_high_5 (Length: 354)
Name: NF0806_high_5
Description: NF0806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0806_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 43456537 - 43456184
Alignment:
| Q |
1 |
gctacatcaaggcgtgaaatgagaatataatataaccatttgaaattaaaacttcaagcaaaatttttgtcacctgaatttgtccatctgaagttccaat |
100 |
Q |
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| T |
43456537 |
gctacatcaaggcgtgaaatgagaatataatataaccatttgaaattaaaacttcaagcaaaatttttgtcacctgaatttgtccatctgaagttccaat |
43456438 |
T |
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| Q |
101 |
caccaaaatttgttcattgctgtctagagccatgcaattaaccttacaatttgtacccaactgtaacgtgccaactttaatgtgtttcttatcccaaatt |
200 |
Q |
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| T |
43456437 |
caccaaaatttgttcattgctgtctagagccatgcaattaaccttacaatttgtacccaactgtaacgtgccaactttaatgtgtttcttatcccaaatt |
43456338 |
T |
|
| Q |
201 |
tctacaacacctcccttgcaccccaaataaattaattctgaactcactgccatagcccgcacttctgatccagtttgcagtgatccaaccatgctgtaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43456337 |
tctacaacacctcccttgcaccccaaataaattaattctgaactcactgccatagcccgcacttctgatccagtttgcagtgatccaaccatgctgtaat |
43456238 |
T |
|
| Q |
301 |
tggaattgttccatatcttgacgtatatgtaaaacagtcagttaactatggtac |
354 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43456237 |
tggaattattccatatcttgacgtatatgtaaaacagtcagttaactatggtac |
43456184 |
T |
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