View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0806_high_9 (Length: 313)
Name: NF0806_high_9
Description: NF0806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0806_high_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 21641573 - 21641277
Alignment:
| Q |
16 |
atctaaccaaatttttcaatcactaatctttgagattgtaattgaaatccactagaagatgaatatagaaaactaaagaagaggatggtatcttgaaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21641573 |
atctaaccaaatttttcaatcactaatctttgagattgtaattgaaatccactagaagatgaatatagaaaactaaagaagaggatggtatcttgaaatt |
21641474 |
T |
|
| Q |
116 |
tgaagagtaacggtttgtgtgcccannnnnnnnnnnnnnnnnncaagtggaaaagtaggcacgaaa-ttataatgtatgtcacatgttctaaacgcgtta |
214 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21641473 |
tgaagagtaacggtttgtgtgcccaatatattatatatata--caagtggaaaagtaggcacgaaaattataatgtatgtcacatgttctaaacgcgtta |
21641376 |
T |
|
| Q |
215 |
ccttcacatatattttcccattggacccataagataccatattaaaagccaaatttgatgccatagaaaaaggttatgctgcgtttttggcacttcata |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21641375 |
ccttcacatatattttcccattggacccataagataccatattaaaagccaaatttgatgccatagaaaaaggttatgctgcgtttttggcacttcata |
21641277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5207 times since January 2019
Visitors: 5755