View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0806_low_10 (Length: 340)

Name: NF0806_low_10
Description: NF0806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0806_low_10
NF0806_low_10
[»] chr5 (10 HSPs)
chr5 (200-311)||(30441473-30441584)
chr5 (200-311)||(7472385-7472497)
chr5 (200-311)||(9044935-9045047)
chr5 (200-311)||(22002929-22003041)
chr5 (200-311)||(30442773-30442885)
chr5 (200-312)||(32871989-32872102)
chr5 (94-126)||(30442667-30442699)
chr5 (93-126)||(32872176-32872209)
chr5 (94-126)||(9045121-9045153)
chr5 (94-126)||(30441367-30441399)
[»] chr7 (12 HSPs)
chr7 (200-311)||(43070259-43070371)
chr7 (200-311)||(14232011-14232123)
chr7 (200-311)||(26906644-26906756)
chr7 (16-89)||(45830226-45830299)
chr7 (200-311)||(1264734-1264846)
chr7 (200-311)||(48847092-48847204)
chr7 (227-298)||(13764791-13764863)
chr7 (227-283)||(11646835-11646891)
chr7 (229-311)||(44548370-44548453)
chr7 (91-126)||(48846983-48847018)
chr7 (93-126)||(1264920-1264953)
chr7 (93-126)||(14237211-14237244)
[»] chr2 (12 HSPs)
chr2 (200-311)||(18354184-18354296)
chr2 (200-311)||(23347857-23347969)
chr2 (200-311)||(12742774-12742886)
chr2 (200-268)||(10328216-10328284)
chr2 (227-283)||(2040289-2040345)
chr2 (94-126)||(12742960-12742992)
chr2 (94-126)||(23347751-23347783)
chr2 (257-304)||(30045029-30045077)
chr2 (257-304)||(30050192-30050240)
chr2 (257-304)||(30141236-30141284)
chr2 (263-311)||(30015593-30015642)
chr2 (263-311)||(30074690-30074739)
[»] chr3 (24 HSPs)
chr3 (200-311)||(37984883-37984995)
chr3 (200-311)||(12531275-12531388)
chr3 (200-309)||(19769693-19769803)
chr3 (200-311)||(17689467-17689579)
chr3 (200-304)||(31687676-31687781)
chr3 (217-311)||(24758882-24758977)
chr3 (217-311)||(24767879-24767974)
chr3 (217-311)||(24813164-24813259)
chr3 (217-311)||(24827037-24827132)
chr3 (200-268)||(19881300-19881368)
chr3 (224-311)||(33648248-33648336)
chr3 (200-268)||(53972476-53972544)
chr3 (217-299)||(53024788-53024871)
chr3 (213-277)||(24124720-24124785)
chr3 (217-300)||(53352053-53352136)
chr3 (231-304)||(47761384-47761458)
chr3 (93-126)||(37985069-37985102)
chr3 (91-126)||(17689653-17689688)
chr3 (234-311)||(11396626-11396704)
chr3 (92-126)||(19881192-19881226)
chr3 (227-285)||(50835519-50835577)
chr3 (227-285)||(50840276-50840334)
chr3 (227-311)||(43400936-43401021)
chr3 (94-126)||(31687855-31687887)
[»] chr8 (5 HSPs)
chr8 (200-311)||(8163931-8164042)
chr8 (210-304)||(14672460-14672555)
chr8 (200-297)||(27535377-27535476)
chr8 (227-285)||(11730389-11730447)
chr8 (227-285)||(23740701-23740759)
[»] chr1 (3 HSPs)
chr1 (200-311)||(25226781-25226893)
chr1 (227-311)||(32437583-32437668)
chr1 (96-126)||(25226967-25226997)
[»] scaffold0035 (1 HSPs)
scaffold0035 (210-311)||(37083-37185)
[»] scaffold0096 (2 HSPs)
scaffold0096 (200-311)||(32509-32624)
scaffold0096 (93-126)||(32698-32731)
[»] chr6 (5 HSPs)
chr6 (200-312)||(21999241-21999354)
chr6 (201-311)||(31891360-31891471)
chr6 (229-311)||(22681798-22681881)
chr6 (227-298)||(27447068-27447140)
chr6 (245-285)||(25169691-25169731)
[»] chr4 (3 HSPs)
chr4 (210-304)||(29861354-29861449)
chr4 (231-309)||(24262590-24262669)
chr4 (227-272)||(17404859-17404904)
[»] scaffold0045 (1 HSPs)
scaffold0045 (200-311)||(10192-10303)
[»] scaffold0596 (2 HSPs)
scaffold0596 (200-268)||(1516-1584)
scaffold0596 (92-126)||(1658-1692)
[»] scaffold0003 (2 HSPs)
scaffold0003 (227-298)||(33590-33662)
scaffold0003 (227-298)||(40218-40290)


Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 30441473 - 30441584
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatcccattgtcatccgtta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30441473 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatcccattgtcatccgtta 30441572  T
Q  300 ataatttcttca 311  Q
    ||||||||||||    
T  30441573 ataatttcttca 30441584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 7472385 - 7472497
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc-ccattgtcatccgtt 298  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7472385 gtatttaagggtatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatctccattgtcatccgtt 7472484  T
Q  299 aataatttcttca 311  Q
    |||||||||||||    
T  7472485 aataatttcttca 7472497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 9045047 - 9044935
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgtt 298  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9045047 gtatttaagggcatacaaaatattgggtcacagattttcgaatatctccttataaactacatttgaagtggtgctgatacaatccccattgtcatccgtt 9044948  T
Q  299 aataatttcttca 311  Q
    |||||||||||||    
T  9044947 aataatttcttca 9044935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 22002929 - 22003041
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgtt 298  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  22002929 gtatttaagggcatacaaaatattgggtcacacgttttcgaatatctccttataaactacatttgaagtggtgctgatacaatccccattgttatccgtt 22003028  T
Q  299 aataatttcttca 311  Q
    |||||| ||||||    
T  22003029 aataatatcttca 22003041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 30442773 - 30442885
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgtt 298  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||    
T  30442773 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtccttatacaatccccattgtcatccgtt 30442872  T
Q  299 aataatttcttca 311  Q
    |||||| ||||||    
T  30442873 aataatatcttca 30442885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 32872102 - 32871989
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgtt 298  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  |||    
T  32872102 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggcgctgatacaatccccattgtcatttgtt 32872003  T
Q  299 aataatttcttcat 312  Q
    |||||| |||||||    
T  32872002 aataatatcttcat 32871989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 30442667 - 30442699
Alignment:
Q  94 actaggactattacccgtgctaacgcccgggac 126  Q
    |||||||||||||||||||||||||||||||||    
T  30442667 actaggactattacccgtgctaacgcccgggac 30442699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 32872209 - 32872176
Alignment:
Q  93 aactaggactattacccgtgctaacgcccgggac 126  Q
    |||||||||| |||||||||||||||||||||||    
T  32872209 aactaggacttttacccgtgctaacgcccgggac 32872176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 9045153 - 9045121
Alignment:
Q  94 actaggactattacccgtgctaacgcccgggac 126  Q
    ||||||| |||||||||||||||||||||||||    
T  9045153 actaggattattacccgtgctaacgcccgggac 9045121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 30441367 - 30441399
Alignment:
Q  94 actaggactattacccgtgctaacgcccgggac 126  Q
    ||||||||||||||||||||||||| |||||||    
T  30441367 actaggactattacccgtgctaacgtccgggac 30441399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 43070259 - 43070371
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgtt 298  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43070259 gtatttaagagaatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatccccattgtcatccgtt 43070358  T
Q  299 aataatttcttca 311  Q
    |||||||||||||    
T  43070359 aataatttcttca 43070371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 14232123 - 14232011
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgtt 298  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||    
T  14232123 gtatttaagggcgtacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtccttatacaatccccattgtcatccgtt 14232024  T
Q  299 aataatttcttca 311  Q
    |||||| ||||||    
T  14232023 aataatatcttca 14232011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 26906644 - 26906756
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc-ccattgtcatccgtt 298  Q
    ||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  26906644 gtatttaagggcatataaaatattgagtcacacattttcgaatatctccttataaactacatttgaaatggtgttgatacaatctccattgtcatccgtt 26906743  T
Q  299 aataatttcttca 311  Q
    |||||| ||||||    
T  26906744 aataatatcttca 26906756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 45830299 - 45830226
Alignment:
Q  16 atatagtttatagtcattggttgacactaagcctctagtcattggttgcatatatatagtttatctgaggaaaa 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45830299 atatagtttatagtcattggttgacactaagcctctagtcattggttgcatatatatagtttatctgaggaaaa 45830226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 1264846 - 1264734
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatcc-cattgtcatccgtt 298  Q
    |||||||||  | |||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||| |||||||||  |||    
T  1264846 gtatttaaggtcttacaaaatattgggtcacacattttcgaatattttcttataagctacatttgaagtggtgctaatacaatcctcattgtcatatgtt 1264747  T
Q  299 aataatttcttca 311  Q
    |||||| ||||||    
T  1264746 aataatatcttca 1264734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 48847092 - 48847204
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatcc-cattgtcatccgtt 298  Q
    |||||||||  | |||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||| ||||||||| |||||||||  |||    
T  48847092 gtatttaaggccctacaaaatattgggtcacacattttcgaatactttcttataaactacatttgaagtggtgctaatacaatcctcattgtcatatgtt 48847191  T
Q  299 aataatttcttca 311  Q
    |||||| ||||||    
T  48847192 aataatatcttca 48847204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 13764863 - 13764791
Alignment:
Q  227 tcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc-ccattgtcatccgtt 298  Q
    ||||||||||| |||||| || ||||| |||||||||||||||||| ||||| ||||  ||||||||||||||    
T  13764863 tcacacattttggaatatatctttatacactacatttgaagtggtgttgatataatcttcattgtcatccgtt 13764791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 11646835 - 11646891
Alignment:
Q  227 tcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc 283  Q
    |||||||||||  |||||||| ||||| |||||||||||||||||  ||||||||||    
T  11646835 tcacacattttgaaatatctctttatacactacatttgaagtggttttgatacaatc 11646891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 44548453 - 44548370
Alignment:
Q  229 acacattttcgaatatctccttataaactacattt-gaagtggtgctgatacaatcccattgtcatccgttaataatttcttca 311  Q
    ||||||||| ||||||||| ||| | |||| |||| |||||||||   |||||||| ||| |||||||||||||||| ||||||    
T  44548453 acacattttagaatatctctttaaacactaaattttgaagtggtgtcaatacaatctcatcgtcatccgttaataatatcttca 44548370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 48846983 - 48847018
Alignment:
Q  91 ataactaggactattacccgtgctaacgcccgggac 126  Q
    |||||||||||| |||||||||||||||||||||||    
T  48846983 ataactaggacttttacccgtgctaacgcccgggac 48847018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 1264953 - 1264920
Alignment:
Q  93 aactaggactattacccgtgctaacgcccgggac 126  Q
    |||||||||| |||||||||||||||||||||||    
T  1264953 aactaggacttttacccgtgctaacgcccgggac 1264920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 14237244 - 14237211
Alignment:
Q  93 aactaggactattacccgtgctaacgcccgggac 126  Q
    ||||||||||||||||||||||||||| ||||||    
T  14237244 aactaggactattacccgtgctaacgctcgggac 14237211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 18354184 - 18354296
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc-ccattgtcatccgtt 298  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18354184 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatctccattgtcatccgtt 18354283  T
Q  299 aataatttcttca 311  Q
    |||||||||||||    
T  18354284 aataatttcttca 18354296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 23347857 - 23347969
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgtt 298  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23347857 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatccccattgtcatccgtt 23347956  T
Q  299 aataatttcttca 311  Q
    |||||||||||||    
T  23347957 aataatttcttca 23347969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 12742886 - 12742774
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaa-tcccattgtcatccgtt 298  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  12742886 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatataattcccattgtcatccgtt 12742787  T
Q  299 aataatttcttca 311  Q
    |||||||||||||    
T  12742786 aataatttcttca 12742774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 10328216 - 10328284
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagt 268  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10328216 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctctttataaactacatttgaagt 10328284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 2040289 - 2040345
Alignment:
Q  227 tcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc 283  Q
    |||||||||||  |||||||| ||||| |||||||||||||||||  ||||||||||    
T  2040289 tcacacattttgaaatatctctttatacactacatttgaagtggttttgatacaatc 2040345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 12742992 - 12742960
Alignment:
Q  94 actaggactattacccgtgctaacgcccgggac 126  Q
    |||||||||||||||||||||||||||||||||    
T  12742992 actaggactattacccgtgctaacgcccgggac 12742960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 23347751 - 23347783
Alignment:
Q  94 actaggactattacccgtgctaacgcccgggac 126  Q
    |||||||||||||||||||||||||||||||||    
T  23347751 actaggactattacccgtgctaacgcccgggac 23347783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 30045029 - 30045077
Alignment:
Q  257 tacatttgaagtggtgctgatacaat-cccattgtcatccgttaataat 304  Q
    |||||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  30045029 tacatttgaagtggtgttgatacaatccccattgtcatccattaataat 30045077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 30050192 - 30050240
Alignment:
Q  257 tacatttgaagtggtgctgatacaat-cccattgtcatccgttaataat 304  Q
    |||||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  30050192 tacatttgaagtggtgttgatacaatccccattgtcatccattaataat 30050240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 30141236 - 30141284
Alignment:
Q  257 tacatttgaagtggtgctgatacaat-cccattgtcatccgttaataat 304  Q
    |||||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  30141236 tacatttgaagtggtgttgatacaatccccattgtcatccattaataat 30141284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 30015642 - 30015593
Alignment:
Q  263 tgaagtggtgctgatacaatccc-attgtcatccgttaataatttcttca 311  Q
    |||||||||| |||||||||||| |||||||||| |||||||| ||||||    
T  30015642 tgaagtggtgttgatacaatccccattgtcatccattaataatatcttca 30015593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 30074739 - 30074690
Alignment:
Q  263 tgaagtggtgctgatacaatc-ccattgtcatccgttaataatttcttca 311  Q
    |||||||||| |||||||||| |||||||||||| |||||||| ||||||    
T  30074739 tgaagtggtgttgatacaatctccattgtcatccattaataatatcttca 30074690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 37984995 - 37984883
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgtt 298  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  37984995 gtatttaagggcatacaaaatattgggtcacacattttcgaatatcttcttataaactacatttgaagtggtgctgatacaatccccaatgtcatccgtt 37984896  T
Q  299 aataatttcttca 311  Q
    |||||| ||||||    
T  37984895 aataatatcttca 37984883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 12531275 - 12531388
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttg-aagtggtgctgatacaat-cccattgtcatccgt 297  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  12531275 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaaagtggtgctgatacaatccccattgtcatccgt 12531374  T
Q  298 taataatttcttca 311  Q
    || |||| ||||||    
T  12531375 tagtaatatcttca 12531388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 19769803 - 19769693
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc-ccattgtcatccgtt 298  Q
    ||||||||| |||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19769803 gtatttaagggcatacaaaatattgaatcacacattttcaaatatctccttataaactacatttgaagtggtgctgatacaatctccattgtcatccgtt 19769704  T
Q  299 aataatttctt 309  Q
    |||||| ||||    
T  19769703 aataatatctt 19769693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 17689579 - 17689467
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgtt 298  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| |||||||||||| |||    
T  17689579 gtatttaagggcatacaaaatattgggtcacacattttcgaatatttccttataaactacatttgaaatggtgctgatataatccccattgtcatctgtt 17689480  T
Q  299 aataatttcttca 311  Q
    |||||| ||||||    
T  17689479 aataatatcttca 17689467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 200 - 304
Target Start/End: Complemental strand, 31687781 - 31687676
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgtt 298  Q
    |||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||  |||    
T  31687781 gtatttaaggccatacaaaatattgggtcacacattttcgaatatttccttataaactacatttgaagtggtgctgatacaatccccattgtcatatgtt 31687682  T
Q  299 aataat 304  Q
    ||||||    
T  31687681 aataat 31687676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 24758882 - 24758977
Alignment:
Q  217 aaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc-ccattgtcatccgttaataatttcttca 311  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||||| ||||||    
T  24758882 aaattttgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttaatacaatctccattgtcaaccgttaataatatcttca 24758977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 24767879 - 24767974
Alignment:
Q  217 aaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc-ccattgtcatccgttaataatttcttca 311  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||||| ||||||    
T  24767879 aaattttgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttaatacaatctccattgtcaaccgttaataatatcttca 24767974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 24813259 - 24813164
Alignment:
Q  217 aaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc-ccattgtcatccgttaataatttcttca 311  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||||| ||||||    
T  24813259 aaattttgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttaatacaatctccattgtcaaccgttaataatatcttca 24813164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 24827132 - 24827037
Alignment:
Q  217 aaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc-ccattgtcatccgttaataatttcttca 311  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||||| ||||||    
T  24827132 aaattttgggtcacacattttcaaatatctccttataaactacatttgaagtggtgttaatacaatctccattgtcaaccgttaataatatcttca 24827037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 19881300 - 19881368
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagt 268  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19881300 gtatttaaaggcatacaaaatattgggtcacacattttcgaatatctctttataaactacatttgaagt 19881368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 33648248 - 33648336
Alignment:
Q  224 gggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgttaataatttcttca 311  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| | |||  || |||||||||||||||||||||| ||||||    
T  33648248 gggtcacacattttcaaatatctccttataaactacatttgaagtggtgttaatattatccccattgtcatccgttaataatatcttca 33648336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 53972476 - 53972544
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagt 268  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  53972476 gtatttaagggcatacgaaatattgggtcacacattttcgaatatctctttataaactacgtttgaagt 53972544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 217 - 299
Target Start/End: Original strand, 53024788 - 53024871
Alignment:
Q  217 aaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc-ccattgtcatccgtta 299  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| | |||||||| |||||||||| |||||    
T  53024788 aaattttgggtcacgcattttcaaatatctccttataaactacatttgaagtggtgttaatacaatctccattgtcattcgtta 53024871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 24124720 - 24124785
Alignment:
Q  213 tacaaaatattgggtcacacattttcgaatatctccttat-aaactacatttgaagtggtgctgat 277  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||    
T  24124720 tacaaaatattgggtcacacattttcgaatatttccttataaaactacatttgaagtggtgttgat 24124785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 300
Target Start/End: Original strand, 53352053 - 53352136
Alignment:
Q  217 aaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc-ccattgtcatccgttaa 300  Q
    |||| |||| ||||| |||||| ||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||    
T  53352053 aaattttggatcacatattttcaaatatctccttataaactacatttgaagtggtgttaatacaatctccatt-tcatccgttaa 53352136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 47761384 - 47761458
Alignment:
Q  231 acattttcgaatatctccttataaactacatttgaagtggtgctgatacaatccc-attgtcatccgttaataat 304  Q
    ||||||| |||||| || || || |||||||||||||||||| |||||||||||| ||||||||||||| |||||    
T  47761384 acattttggaatatttctttgtatactacatttgaagtggtgttgatacaatccctattgtcatccgttgataat 47761458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 37985102 - 37985069
Alignment:
Q  93 aactaggactattacccgtgctaacgcccgggac 126  Q
    ||||||||||||||||||||||||||||||||||    
T  37985102 aactaggactattacccgtgctaacgcccgggac 37985069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 17689688 - 17689653
Alignment:
Q  91 ataactaggactattacccgtgctaacgcccgggac 126  Q
    |||||||||||| |||||||||||||||||||||||    
T  17689688 ataactaggacttttacccgtgctaacgcccgggac 17689653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 11396704 - 11396626
Alignment:
Q  234 ttttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgttaataatttcttca 311  Q
    |||||||||||||| ||||| ||||| ||||||||||||    |||| | ||||||||||| |||||||||| ||||||    
T  11396704 ttttcgaatatctctttatacactacgtttgaagtggtgtaattacagtccccattgtcatgcgttaataatatcttca 11396626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 19881192 - 19881226
Alignment:
Q  92 taactaggactattacccgtgctaacgcccgggac 126  Q
    ||||||||||||||||||||||||||| |||||||    
T  19881192 taactaggactattacccgtgctaacgtccgggac 19881226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 50835577 - 50835519
Alignment:
Q  227 tcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatccc 285  Q
    ||||||||||| ||| | ||| ||||| ||||||||| |||||||| ||||||||||||    
T  50835577 tcacacattttggaacacctctttatatactacatttcaagtggtgttgatacaatccc 50835519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 50840276 - 50840334
Alignment:
Q  227 tcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatccc 285  Q
    ||||||||||| ||| | ||| ||||| ||||||||| |||||||| ||||||||||||    
T  50840276 tcacacattttggaacacctctttatatactacatttcaagtggtgttgatacaatccc 50840334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 311
Target Start/End: Complemental strand, 43401021 - 43400936
Alignment:
Q  227 tcacacattttcgaatatctccttataaactacattt-gaagtggtgctgatacaatcccattgtcatccgttaataatttcttca 311  Q
    ||||||||||| ||||||||| ||| | |||| |||| ||||| ||| | ||| | || |||||||||||||||||||| ||||||    
T  43401021 tcacacatttttgaatatctctttaaacactatattttgaagtagtgttaataaagtctcattgtcatccgttaataatatcttca 43400936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 31687887 - 31687855
Alignment:
Q  94 actaggactattacccgtgctaacgcccgggac 126  Q
    ||||||||| |||||||||||||||||||||||    
T  31687887 actaggacttttacccgtgctaacgcccgggac 31687855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 8164042 - 8163931
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgtt 298  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  8164042 gtatttaagggcatacaaa-tattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatataatccccattgtcatccgtt 8163944  T
Q  299 aataatttcttca 311  Q
    |||||| ||||||    
T  8163943 aataatatcttca 8163931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 14672460 - 14672555
Alignment:
Q  210 gcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgttaataat 304  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  14672460 gcatacaaaatattgggtcacacattttcgaatatttccttataaactacatttgaagtggtgctgatacaatccccattgtcatctgttaataat 14672555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 200 - 297
Target Start/End: Original strand, 27535377 - 27535476
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaac-tacatttgaagtggtgctgatacaatcc-cattgtcatccgt 297  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||| |||||||||||||    
T  27535377 gtatttaagggcatacaaaatattgggtcacacattttcaaatatctccttgtaaacataaatttgaagtggtgctgatacaatcctcattgtcatccgt 27535476  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 11730447 - 11730389
Alignment:
Q  227 tcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatccc 285  Q
    ||||||||||| ||| | ||| ||||| ||||||||| |||||||| ||||||||||||    
T  11730447 tcacacattttggaacacctctttatatactacatttcaagtggtgttgatacaatccc 11730389  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 23740759 - 23740701
Alignment:
Q  227 tcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatccc 285  Q
    ||||||||||| ||| | ||| ||||| ||||||||| |||||||| ||||||||||||    
T  23740759 tcacacattttggaacacctctttatatactacatttcaagtggtgttgatacaatccc 23740701  T

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Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 25226893 - 25226781
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgtt 298  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||||    
T  25226893 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctccttataaattacatttgaagtggtccttatacaatccccattgtcatccgtt 25226794  T
Q  299 aataatttcttca 311  Q
    |||||| ||||||    
T  25226793 aataatatcttca 25226781  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 32437583 - 32437668
Alignment:
Q  227 tcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgttaataatttcttca 311  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||    |||| | ||||||||||| |||||||||| ||||||    
T  32437583 tcacacattttcgaatatctctttatacactacatttgaagtggtgtaattacagtccccattgtcatgcgttaataatatcttca 32437668  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 126
Target Start/End: Complemental strand, 25226997 - 25226967
Alignment:
Q  96 taggactattacccgtgctaacgcccgggac 126  Q
    |||||||||||||||||||||||||||||||    
T  25226997 taggactattacccgtgctaacgcccgggac 25226967  T

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Target: scaffold0035 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 210 - 311
Target Start/End: Complemental strand, 37185 - 37083
Alignment:
Q  210 gcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgttaataatttct 308  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||    
T  37185 gcatacaaaatattgggtcacacattttcgaatatttccttataaactacatttgaagtggtgctgatacaatccccattgtcatctgttaataatatct 37086  T
Q  309 tca 311  Q
    |||    
T  37085 tca 37083  T

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Target: scaffold0096 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 32624 - 32509
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatc---c 295  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||   |    
T  32624 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctccttttaaactacatttgaagtggtgctgatacaatccccattgtcatctgtc 32525  T
Q  296 gttaataatttcttca 311  Q
    ||||||||| ||||||    
T  32524 gttaataatatcttca 32509  T

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Target: scaffold0096; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 32731 - 32698
Alignment:
Q  93 aactaggactattacccgtgctaacgcccgggac 126  Q
    |||||||||| |||||||||||||||||||||||    
T  32731 aactaggacttttacccgtgctaacgcccgggac 32698  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 200 - 312
Target Start/End: Original strand, 21999241 - 21999354
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgtt 298  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  21999241 gtatttaagggcatacaaaatattgggtcgcacatttttgaatatttccttataaactacatttgaagtggtgctgatacaatccccattgtcatctgtt 21999340  T
Q  299 aataatttcttcat 312  Q
    |||||| |||||||    
T  21999341 aataatatcttcat 21999354  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 31891360 - 31891471
Alignment:
Q  201 tatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgtta 299  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| |||||||||||  ||||    
T  31891360 tatttaagggcatataaaatattgggtcacacattttcgaatatttccttataaactatatttgaagtggtactgatacaatccccattgtcatatgtta 31891459  T
Q  300 ataatttcttca 311  Q
    ||||| ||||||    
T  31891460 ataatatcttca 31891471  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 22681881 - 22681798
Alignment:
Q  229 acacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgttaataatttcttca 311  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    |||| | ||||||||||| |||||||||| ||||||    
T  22681881 acacattttcgaatatctctttatacactacatttgaagtggtgtaattacagtccccattgtcatgcgttaataatatcttca 22681798  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 27447140 - 27447068
Alignment:
Q  227 tcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc-ccattgtcatccgtt 298  Q
    |||||||||||  |||||||| ||||| ||||||||| |||||||| ||| | |||| |||||||||||||||    
T  27447140 tcacacattttgaaatatctctttatacactacatttaaagtggtgttgaaataatctccattgtcatccgtt 27447068  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 25169731 - 25169691
Alignment:
Q  245 ctccttataaactacatttgaagtggtgctgatacaatccc 285  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  25169731 ctccttatagactacatttgaagtggtgccgatgcaatccc 25169691  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 29861354 - 29861449
Alignment:
Q  210 gcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaat-cccattgtcatccgttaataat 304  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  29861354 gcatacaaaatattgggtcacacattttcgaatatttccttataaactacatttgaagtggtgctgatacaatccccattgtcatctgttaataat 29861449  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 309
Target Start/End: Complemental strand, 24262669 - 24262590
Alignment:
Q  231 acattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc-ccattgtcatccgttaataatttctt 309  Q
    ||||||| ||||||||| ||||| |||||||||||||||||| ||||||||||  |||||||||| ||||||||| ||||    
T  24262669 acattttggaatatctctttatatactacatttgaagtggtgttgatacaatcatcattgtcatctgttaataatatctt 24262590  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 17404859 - 17404904
Alignment:
Q  227 tcacacattttcgaatatctccttataaactacatttgaagtggtg 272  Q
    ||||||||||||||||||||| ||||| || |||||||||||||||    
T  17404859 tcacacattttcgaatatctctttatacacaacatttgaagtggtg 17404904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 10192 - 10303
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatcc-cattgtcatccgtt 298  Q
    ||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||    
T  10192 gtatttaagggcgtacaaa-tattgggtcacacattttcgaatatctccttataaactacatttgaggtggtgctgatacaatcctcattgttatccgtt 10290  T
Q  299 aataatttcttca 311  Q
    |||||| ||||||    
T  10291 aataatatcttca 10303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 1584 - 1516
Alignment:
Q  200 gtatttaagagcatacaaaatattgggtcacacattttcgaatatctccttataaactacatttgaagt 268  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  1584 gtatttaagggcatacaaaatattgggtcacacattttcgaatatctctttataaactacgtttgaagt 1516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 1692 - 1658
Alignment:
Q  92 taactaggactattacccgtgctaacgcccgggac 126  Q
    |||||||||||||||||||||||||||||||||||    
T  1692 taactaggactattacccgtgctaacgcccgggac 1658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 298
Target Start/End: Original strand, 33590 - 33662
Alignment:
Q  227 tcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc-ccattgtcatccgtt 298  Q
    ||||||||||| ||||||| | ||||| |||||||||||||||||| ||||| |||| |||||||||||||||    
T  33590 tcacacattttggaatatcactttatatactacatttgaagtggtgttgatataatctccattgtcatccgtt 33662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 298
Target Start/End: Original strand, 40218 - 40290
Alignment:
Q  227 tcacacattttcgaatatctccttataaactacatttgaagtggtgctgatacaatc-ccattgtcatccgtt 298  Q
    |||||||||||  |||||||| ||||| ||||||||| |||||||| ||| | |||| |||||||||||||||    
T  40218 tcacacattttgaaatatctctttatacactacatttaaagtggtgttgaaataatctccattgtcatccgtt 40290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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