View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0806_low_13 (Length: 328)

Name: NF0806_low_13
Description: NF0806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0806_low_13
NF0806_low_13
[»] chr8 (5 HSPs)
chr8 (28-317)||(12729393-12729683)
chr8 (27-268)||(44729080-44729321)
chr8 (170-274)||(28695986-28696091)
chr8 (28-131)||(14546289-14546392)
chr8 (260-305)||(18609067-18609112)
[»] chr3 (9 HSPs)
chr3 (28-317)||(52653776-52654075)
chr3 (28-317)||(33709832-33710129)
chr3 (27-154)||(40574301-40574429)
chr3 (62-147)||(23686069-23686155)
chr3 (62-147)||(24058306-24058392)
chr3 (27-108)||(16729780-16729862)
chr3 (232-278)||(16729894-16729940)
chr3 (62-118)||(31362266-31362323)
chr3 (271-311)||(49784174-49784214)
[»] chr1 (14 HSPs)
chr1 (28-280)||(49053796-49054049)
chr1 (28-280)||(49061376-49061629)
chr1 (27-138)||(52282015-52282129)
chr1 (31-194)||(42263378-42263541)
chr1 (28-115)||(17458413-17458501)
chr1 (271-317)||(35624693-35624739)
chr1 (109-162)||(10917598-10917651)
chr1 (271-316)||(21432147-21432192)
chr1 (271-311)||(43358433-43358473)
chr1 (240-278)||(21432107-21432145)
chr1 (240-278)||(29681315-29681353)
chr1 (240-278)||(44524460-44524498)
chr1 (271-316)||(44524500-44524545)
chr1 (30-130)||(50059498-50059599)
[»] chr5 (6 HSPs)
chr5 (28-278)||(9851308-9851557)
chr5 (28-277)||(29006487-29006737)
chr5 (39-154)||(9080639-9080755)
chr5 (55-138)||(36203121-36203204)
chr5 (271-316)||(2022636-2022681)
chr5 (205-268)||(15205513-15205576)
[»] chr7 (9 HSPs)
chr7 (27-275)||(12239489-12239738)
chr7 (99-278)||(23757034-23757212)
chr7 (27-138)||(34091475-34091587)
chr7 (211-317)||(37469063-37469178)
chr7 (38-133)||(24870430-24870526)
chr7 (55-267)||(20464024-20464237)
chr7 (215-300)||(1840839-1840930)
chr7 (240-278)||(5436972-5437010)
chr7 (271-317)||(24870672-24870718)
[»] chr4 (13 HSPs)
chr4 (27-277)||(48779724-48779975)
chr4 (28-278)||(20251412-20251663)
chr4 (28-181)||(24391837-24391989)
chr4 (271-316)||(3425182-3425227)
chr4 (240-316)||(3415594-3415679)
chr4 (271-311)||(30020332-30020372)
chr4 (28-147)||(24129335-24129457)
chr4 (240-278)||(3425142-3425180)
chr4 (229-275)||(24129195-24129241)
chr4 (240-278)||(32429726-32429764)
chr4 (240-277)||(18670566-18670603)
chr4 (240-277)||(18736884-18736921)
chr4 (271-311)||(18736841-18736881)
[»] chr6 (3 HSPs)
chr6 (31-298)||(11931960-11932227)
chr6 (28-298)||(28611983-28612260)
chr6 (271-317)||(24075623-24075669)
[»] chr2 (4 HSPs)
chr2 (28-278)||(14218750-14219000)
chr2 (38-294)||(34680955-34681207)
chr2 (57-137)||(38327394-38327475)
chr2 (271-311)||(42779878-42779917)
[»] scaffold0007 (2 HSPs)
scaffold0007 (28-146)||(217751-217870)
scaffold0007 (229-278)||(217944-217991)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 28 - 317
Target Start/End: Original strand, 12729393 - 12729683
Alignment:
Q  28 taaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccattatcgatacgcttggtgtgaatgtgcaagtcac 127  Q
    ||||| ||| |||||||||||| || ||||||||||||||||| |||||||||  |||| |||| ||| |||||| |||||||||||||||||||||||     
T  12729393 taaataattctttcttttctctagtgcacgagagaaattgacagaactttattcagtaaactacaattgtcgatatgcttggtgtgaatgtgcaagtcat 12729492  T
Q  128 gtcaatgattccatcgtatcatgaaggagattcaccgatataacccttttgcatttggttggcataaatagtgg-ggtgaattgaacctaaatgttactg 226  Q
    ||||| |||| ||||||||| |||||| || || ||| ||||||||||||||||  ||||||||||| | |||| || |||| | ||||||| |||| ||    
T  12729493 gtcaaggatttcatcgtatcctgaaggggaatcgccggtataacccttttgcatccggttggcataactggtggaggcgaatcgtacctaaaggttagtg 12729592  T
Q  227 tatcccacacacgctttggaatttatgtgcactcttcatcatgttcatcttcttgatcaagttattgcagcagatccccaacacaggttct 317  Q
    | |||||||||| |||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12729593 tgtcccacacactctttggaattcatgtgtacttttcatcatgttcatcttcttgatcaaggtattgcagcagatccccaacacaggttct 12729683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 27 - 268
Target Start/End: Original strand, 44729080 - 44729321
Alignment:
Q  27 ttaaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtc 125  Q
    |||| ||||| |||| |||| || || ||||||||| |||||||  |||  ||| ||||| ||| |||| ||||||||||||||| ||||||||||||||    
T  44729080 ttaagtcattctttcatttccctagtgcacgagagagattgaca--actacattctgtaaactatcattgatcgatacgcttggtatgaatgtgcaagtc 44729177  T
Q  126 acgtcaatgattccatcgtatcatgaaggagattcaccgatataacccttttgcatttggttggcataaatagt-ggggtgaattgaacctaaatgttac 224  Q
    ||||||| |||||||  ||||| | |||| ||||| ||| ||| ||||| ||||||  ||||||||||| | |  |||||||||||||| |||| ||||     
T  44729178 acgtcaaggattccaatgtatcctaaaggggattcgccggtattaccctcttgcatccggttggcataactcgcaggggtgaattgaacataaaggttag 44729277  T
Q  225 tgtatcccacacacgctttggaatttatgtgcactcttcatcat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  44729278 tgtatcccacacacgctttggaatttatgtgcactcttcatcat 44729321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 28696091 - 28695986
Alignment:
Q  170 acccttttgcatttggttggcataaatagtg-gggtgaattgaacctaaatgttactgtatcccacacacgctttggaatttatgtgcactcttcatcat 268  Q
    |||||||||||| |||||| ||||| | ||| ||| ||||  |||||||| |||| ||| ||||||||||||||||||||||||| ||| ||||||||||    
T  28696091 acccttttgcatctggttgacataactggtgagggcgaatcaaacctaaaagttagtgtgtcccacacacgctttggaatttatgcgcattcttcatcat 28695992  T
Q  269 gttcat 274  Q
    ||||||    
T  28695991 gttcat 28695986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 14546392 - 14546289
Alignment:
Q  28 taaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtca 126  Q
    ||||||||| ||||||||||||  |  |  ||||||||||||||||||||| | |||||  ||||||| ||||||| | |||||||||||||||||||||    
T  14546392 taaatcattctttcttttctctaatgaatcagagaaattgacataactttagtatgtaaagtaccattgatcgata-gtttggtgtgaatgtgcaagtca 14546294  T
Q  127 cgtca 131  Q
     ||||    
T  14546293 tgtca 14546289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 18609067 - 18609112
Alignment:
Q  260 cttcatcatgttcatcttcttgatcaagttattgcagcagatcccc 305  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||    
T  18609067 cttcatcatgttcatcttcttagtcaagttattgcagcagaccccc 18609112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 28 - 317
Target Start/End: Original strand, 52653776 - 52654075
Alignment:
Q  28 taaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccattatcgatacgcttggtgtgaatgtgcaagtcac 127  Q
    ||||||||| || ||||||||| || ||||||  ||||||||| ||||||||| ||||| |||||||| ||||||| |||| ||||||||||||||||||    
T  52653776 taaatcattcttacttttctctagtgcacgaggaaaattgacagaactttattctgtaaactaccattgtcgatacacttgatgtgaatgtgcaagtcac 52653875  T
Q  128 gtcaatgattccatcgtatcatgaaggagattcaccgatataacccttttgcatttggttggcataaatagtg-gggtgaattgaacctaaatgttactg 226  Q
    ||||| |||||||| ||||| |||||| ||||| ||| ||||||| ||||||||  ||||||||||| | ||| ||| |||||||||||||| |||| ||    
T  52653876 gtcaaggattccattgtatcctgaaggggattcgccggtataaccattttgcatccggttggcataactggtgagggcgaattgaacctaaaggttagtg 52653975  T
Q  227 tatcccacacacgctttggaatttatgtgcactcttcatcatgt---------tcatcttcttgatcaagttattgcagcagatccccaacacaggttct 317  Q
    | |||||||||||||||||||||||||||||| |||||||||||         |||||||||||||||||||||||| ||| | ||| ||||||||||||    
T  52653976 tgtcccacacacgctttggaatttatgtgcacacttcatcatgttcattttcatcatcttcttgatcaagttattgccgcaaaccccaaacacaggttct 52654075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 28 - 317
Target Start/End: Original strand, 33709832 - 33710129
Alignment:
Q  28 taaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccattatcgatacgcttggtgtgaatgtgcaagtcac 127  Q
    ||||||||| |||||||||||| || ||| |||||| |||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||    
T  33709832 taaatcattctttcttttctctagtgcaccagagaatttgacagaactttattctgtaaactaccattgtcgatacgcttggtgtgaatgtgcaagtcac 33709931  T
Q  128 gtcaatgattccatcgtatcatgaaggagattcaccgatata-acccttttgcatttggttggcataaatagtgg-ggtgaattgaacctaaatgttact 225  Q
    ||||| ||||| |||||||| | |||| ||||  ||| |||| ||||||||||||  ||||| ||||| | |||| ||||||| || |||||| |||| |    
T  33709932 gtcaaggattctatcgtatcctaaaggggattagccggtatatacccttttgcatccggttgacataactggtggaggtgaatcgatcctaaaggttagt 33710031  T
Q  226 gtatcccacacacgctttggaatttatgtgcactcttcatcatgt--------tcatcttcttgatcaagttattgcagcagatccccaacacaggttct 317  Q
    || ||||||||||||||||||||||| |||||| |||||||||||        |||| |||||| ||||| |||||||||||| ||||||||||||||||    
T  33710032 gtgtcccacacacgctttggaattta-gtgcacacttcatcatgttcttcatatcattttcttggtcaagatattgcagcaga-ccccaacacaggttct 33710129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 40574429 - 40574301
Alignment:
Q  27 ttaaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtc 125  Q
    |||||||||| |||||||||||| || ||||||||||||||||| ||||||||| ||||| ||| |||| || ||||||||| |||||||||||||||||    
T  40574429 ttaaatcattctttcttttctctagtgcacgagagaaattgacagaactttattctgtaaactatcattgattgatacgcttcgtgtgaatgtgcaagtc 40574330  T
Q  126 acgtcaatgattccatcgtatcatgaagg 154  Q
    ||||||| |||||||| ||||| ||||||    
T  40574329 acgtcaaagattccatagtatcctgaagg 40574301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 23686069 - 23686155
Alignment:
Q  62 aaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtcacgtcaatgattccatcgtatc 147  Q
    ||||||||| || |||||| ||||| |||||| | ||||||| ||||||||||||||| ||| |||||||||  ||| |||||||||    
T  23686069 aaattgacaaaattttattctgtaaactaccaatgatcgatatgcttggtgtgaatgtccaaatcacgtcaagaatttcatcgtatc 23686155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 24058306 - 24058392
Alignment:
Q  62 aaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtcacgtcaatgattccatcgtatc 147  Q
    ||||||||| || |||||| ||||| |||||| | ||||||| ||||||||||||||| ||| |||||||||  ||| |||||||||    
T  24058306 aaattgacaaaattttattctgtaaactaccaatgatcgatatgcttggtgtgaatgtccaaatcacgtcaagaatttcatcgtatc 24058392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 16729780 - 16729862
Alignment:
Q  27 ttaaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttg 108  Q
    |||||||||| |||||||| | | || |||||   ||||||||||||||||||||||||| ||| |||| |||||||| ||||    
T  16729780 ttaaatcattctttcttttatttagtgcacgaagaaaattgacataactttattttgtaaactatcattgatcgatacacttg 16729862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 16729894 - 16729940
Alignment:
Q  232 cacacacgctttggaatttatgtgcactcttcatcatgttcatcttc 278  Q
    ||||||||||||| |||| |||||||| ||| |||||||||||||||    
T  16729894 cacacacgctttgaaattaatgtgcacactttatcatgttcatcttc 16729940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 31362323 - 31362266
Alignment:
Q  62 aaattgacataactttattttgtaatctaccat-tatcgatacgcttggtgtgaatgt 118  Q
    ||||||||| ||||||||||||||| |||| ||  ||||||||| |||||||||||||    
T  31362323 aaattgacagaactttattttgtaaactactatcgatcgatacgtttggtgtgaatgt 31362266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 49784214 - 49784174
Alignment:
Q  271 tcatcttcttgatcaagttattgcagcagatccccaacaca 311  Q
    ||||||||||  |||||||||||||||||| ||||||||||    
T  49784214 tcatcttcttcgtcaagttattgcagcagacccccaacaca 49784174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 28 - 280
Target Start/End: Original strand, 49053796 - 49054049
Alignment:
Q  28 taaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccattatcgatacgcttggtgtgaatgtgcaagtcac 127  Q
    ||||||||| ||||| |||||| || |||||| ||||||| || ||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||    
T  49053796 taaatcattctttctcttctctagtgcacgagggaaattggcagaactttattttgtaaactaccattgtcgatatgcttggtgtgaatgtgcaagtcac 49053895  T
Q  128 gtcaatgattccatcgtatcatgaaggagattcaccgatataacccttttgcatttggttggcataaatagt-ggggtgaattgaacctaaatgttactg 226  Q
    ||||| |||| ||| ||||| |||||| ||||| ||| ||||||||||||||||   ||||| |||| | || |||| |||| ||||||||| |||| ||    
T  49053896 gtcaaggatttcattgtatcctgaaggggattcgccggtataacccttttgcatccagttggtataactggtgggggcgaatcgaacctaaaggttagtg 49053995  T
Q  227 tatcccacacacgctttggaatttatgtgcactcttcatcatgttcatcttctt 280  Q
    | |||||||||||| |||||||||||||| || |||||||||||||||||||||    
T  49053996 tttcccacacacgcattggaatttatgtgtacacttcatcatgttcatcttctt 49054049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 28 - 280
Target Start/End: Original strand, 49061376 - 49061629
Alignment:
Q  28 taaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccattatcgatacgcttggtgtgaatgtgcaagtcac 127  Q
    ||||||||| |||||||||||| || |||||| |||||||||| ||||||||| ||||| |||||||| |||||| | ||||||||||||||||| ||||    
T  49061376 taaatcattctttcttttctctagtgcacgagggaaattgacaaaactttattctgtaaactaccattgtcgatatgtttggtgtgaatgtgcaaatcac 49061475  T
Q  128 gtcaatgattccatcgtatcatgaaggagattcaccgatataacccttttgcatttggttggcataaatagt-ggggtgaattgaacctaaatgttactg 226  Q
    ||||| |||||||| ||||  |||||| |||||  || |||||||||||||||| | |||||||||| | || |||| |||| |||||||||   || ||    
T  49061476 gtcaaggattccattgtattctgaaggggattcgtcggtataacccttttgcatctagttggcataactggtgggggcgaatcgaacctaaagactagtg 49061575  T
Q  227 tatcccacacacgctttggaatttatgtgcactcttcatcatgttcatcttctt 280  Q
    | ||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  49061576 tttcccacacacgctttagaatttatgtgcacacttcatcatgttcatcttctt 49061629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 138
Target Start/End: Complemental strand, 52282129 - 52282015
Alignment:
Q  27 ttaaatcattatttcttttctctggtacacgagaga--aattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaag 123  Q
    |||||||||| |||||||||||| || || ||||||  |||||||||||||||||| ||||| |||||||| |||||| |||||||||||||| ||||||    
T  52282129 ttaaatcattctttcttttctctagtgcatgagagagaaattgacataactttattctgtaaactaccattgatcgatgcgcttggtgtgaatatgcaag 52282030  T
Q  124 tcacgtcaatgattc 138  Q
    ||| ||||| |||||    
T  52282029 tcatgtcaaagattc 52282015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 194
Target Start/End: Complemental strand, 42263541 - 42263378
Alignment:
Q  31 atcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtcacgt 129  Q
    |||||| |||||||||||| || |||||||||||| |||| |||||| ||||||||  || ||||  ||||||||||| || ||||||||||||||| ||    
T  42263541 atcattctttcttttctctagtgcacgagagaaatcgacaaaactttgttttgtaaattaacattgttcgatacgcttagtatgaatgtgcaagtcatgt 42263442  T
Q  130 caatgattccatcgtatcatgaaggagattcaccgatataacccttttgcatttggttggcataa 194  Q
    ||| ||||  |  ||||| |||||| ||||||||| ||| ||| |||||||||| |||| |||||    
T  42263441 caaagattttaaagtatcctgaaggggattcaccgttat-accattttgcattttgttgacataa 42263378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 17458413 - 17458501
Alignment:
Q  28 taaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaa 115  Q
    ||||||||| |||| ||||||| || |||||||  ||| || ||||||||||||||||| ||| |||| ||||||||||||||| ||||    
T  17458413 taaatcattctttcatttctctagtgcacgagatgaatagagataactttattttgtaaactatcattgatcgatacgcttggtttgaa 17458501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 35624739 - 35624693
Alignment:
Q  271 tcatcttcttgatcaagttattgcagcagatccccaacacaggttct 317  Q
    ||||||||||| |||||||||||||||||| |||||||||| |||||    
T  35624739 tcatcttcttggtcaagttattgcagcagacccccaacacaagttct 35624693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 10917598 - 10917651
Alignment:
Q  109 gtgtgaatgtgcaagtcacgtcaatgattccatcgtatcatgaaggagattcac 162  Q
    |||||||||||||||||||||||| |||||||   ||||||||||| |||||||    
T  10917598 gtgtgaatgtgcaagtcacgtcaaggattccaagttatcatgaaggtgattcac 10917651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 21432147 - 21432192
Alignment:
Q  271 tcatcttcttgatcaagttattgcagcagatccccaacacaggttc 316  Q
    ||||||||||| |||||||||||||||||| |||||||||| ||||    
T  21432147 tcatcttcttggtcaagttattgcagcagacccccaacacaagttc 21432192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 43358473 - 43358433
Alignment:
Q  271 tcatcttcttgatcaagttattgcagcagatccccaacaca 311  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  43358473 tcatcttcttgatcaatttattgcagtagatccccaacaca 43358433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 21432107 - 21432145
Alignment:
Q  240 ctttggaatttatgtgcactcttcatcatgttcatcttc 278  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  21432107 ctttggaatttatgtgcacacttcagcatgttcatcttc 21432145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Complemental strand, 29681353 - 29681315
Alignment:
Q  240 ctttggaatttatgtgcactcttcatcatgttcatcttc 278  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  29681353 ctttggaatttatttgcacacttcatcatgttcatcttc 29681315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 44524460 - 44524498
Alignment:
Q  240 ctttggaatttatgtgcactcttcatcatgttcatcttc 278  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  44524460 ctttggaatttatgtgcatacttcatcatgttcatcttc 44524498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 44524500 - 44524545
Alignment:
Q  271 tcatcttcttgatcaagttattgcagcagatccccaacacaggttc 316  Q
    ||||||||||||||||||||||||| |||| |||||| ||| ||||    
T  44524500 tcatcttcttgatcaagttattgcaacagacccccaatacaagttc 44524545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 50059498 - 50059599
Alignment:
Q  30 aatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtcacg 128  Q
    ||||||| ||| |||||||| || ||||||||||||| ||| ||||||||| | ||| ||| |||| ||||||||| | | ||||||| |  ||||||||    
T  50059498 aatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaatttataagtcacg 50059597  T
Q  129 tc 130  Q
    ||    
T  50059598 tc 50059599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 28 - 278
Target Start/End: Complemental strand, 9851557 - 9851308
Alignment:
Q  28 taaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccattatcgatacgcttggtgtgaatgtgcaagtcac 127  Q
    ||||||| | |||||||||||| || ||| ||||||  ||||| ||||||||| |||||   |||||| |||||||||||||||||||||||||| ||||    
T  9851557 taaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattgtcgatacgcttggtgtgaatgtgcaaatcac 9851458  T
Q  128 gtcaatgattccatcgtatcatgaaggagattcaccgatataacccttttgcatttggttggcataaatagtggggtgaattgaacctaaatgttactgt 227  Q
     | ||  ||||||||||||| |||||| ||||| ||| |||| |||||||||||| ||||||| ||| | || ||| ||||||||||||||||||| |||    
T  9851457 attaagtattccatcgtatcttgaaggggattcgccggtata-cccttttgcattcggttggcttaactggtagggagaattgaacctaaatgttagtgt 9851359  T
Q  228 atcccacacacgctttggaatttatgtgcactcttcatcatgttcatcttc 278  Q
     ||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  9851358 gtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttc 9851308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 28 - 277
Target Start/End: Original strand, 29006487 - 29006737
Alignment:
Q  28 taaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaat-ctaccattatcgatacgcttggtgtgaatgtgcaagtca 126  Q
    |||||||||  ||||||| ||| || ||||||| || |||||| ||||||||| |||||  ||| ||||  |||||||||||||||||||||| | ||||    
T  29006487 taaatcattcattcttttttctagtgcacgagataagttgacagaactttattctgtaaaactaacattgacgatacgcttggtgtgaatgtgtatgtca 29006586  T
Q  127 cgtcaatgattccatcgtatcatgaaggagattcaccgatataacccttttgcatttggttggcataaatagtggggtgaattgaacctaaatgttactg 226  Q
     ||||| |||||||| ||||  |||||  ||||| || ||||||||||||||||| ||||||  | || |||||||| |||| ||||||||| |||| ||    
T  29006587 tgtcaaggattccattgtattctgaagaggattcgccaatataacccttttgcatctggttgataaaactagtggggcgaatcgaacctaaaagttagtg 29006686  T
Q  227 tatcccacacacgctttggaatttatgtgcactcttcatcatgttcatctt 277  Q
    | || ||||||||||||| ||||||||||||||||||||||| ||||||||    
T  29006687 tgtctcacacacgctttgaaatttatgtgcactcttcatcatattcatctt 29006737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 154
Target Start/End: Complemental strand, 9080755 - 9080639
Alignment:
Q  39 ttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtcacgtcaatgatt 137  Q
    ||||||||||| ||||||||||| |||||| | ||||||||||||||| |||||||| ||| ||||| ||  ||||||||||||||| |||||||  |||    
T  9080755 ttcttttctctagtacacgagagcaattgagagaactttattttgtaaactaccattgatctatacgtttaatgtgaatgtgcaagttacgtcaagaatt 9080656  T
Q  138 ccatcgtatcatgaagg 154  Q
    |||  ||||||||||||    
T  9080655 ccaaagtatcatgaagg 9080639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 36203121 - 36203204
Alignment:
Q  55 acgagagaaattgacataactttattttgtaatctaccattatcgatacgcttggtgtgaatgtgcaagtcacgtcaatgattc 138  Q
    ||||||||| ||| || ||||||||||||||| ||||||||   ||||| |||| |||||| |||||||||||||||| |||||    
T  36203121 acgagagaatttgtcagaactttattttgtaagctaccattgcagatacacttgatgtgaacgtgcaagtcacgtcaaggattc 36203204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 2022681 - 2022636
Alignment:
Q  271 tcatcttcttgatcaagttattgcagcagatccccaacacaggttc 316  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||    
T  2022681 tcatcttcttgatcaagttattgcagcagacccccaacacaagttc 2022636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 15205513 - 15205576
Alignment:
Q  205 gaattgaacctaaatgttactgtatcccacacacgctttggaatttatgtgcactcttcatcat 268  Q
    |||| |||||| || |||| ||| |||||||||||||||| |||||||| ||||||||||||||    
T  15205513 gaatcgaacctcaaagttagtgtgtcccacacacgctttgaaatttatgggcactcttcatcat 15205576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 27 - 275
Target Start/End: Complemental strand, 12239738 - 12239489
Alignment:
Q  27 ttaaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccattatcgatacgcttggtgtgaatgtgcaagtca 126  Q
    |||||| ||| |||||| ||||| ||| || ||| ||||||||| ||||||||| || || |||||||| ||||||||||||||||||||||||||||||    
T  12239738 ttaaattattctttcttatctctagtatactagataaattgacaaaactttattctggaaactaccattgtcgatacgcttggtgtgaatgtgcaagtca 12239639  T
Q  127 cgtcaatgattccatcgtatcatgaaggagattcaccgatataacccttttgcatttgg-ttggcataaatagt-ggggtgaattgaacctaaatgttac 224  Q
    |||||| |||| ||||||||| |||||| ||||| |||| || ||||||||||||  || ||| ||||| | || |||| |||| ||||||||| ||||     
T  12239638 cgtcaaggatttcatcgtatcctgaaggggattcgccgacat-acccttttgcatccggtttgacataactggtgggggcgaatcgaacctaaaggttaa 12239540  T
Q  225 tgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcatc 275  Q
    ||| |||||||||||||||| ||||||||||||| ||||||||| ||||||    
T  12239539 tgtgtcccacacacgctttgaaatttatgtgcacacttcatcatattcatc 12239489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 99 - 278
Target Start/End: Complemental strand, 23757212 - 23757034
Alignment:
Q  99 gatacgcttggtgtgaatgtgcaagtcacgtcaatgattccatcgtatcatgaaggagattcaccgatataacccttttgcatttggttggcataaatag 198  Q
    |||||| |||||||||||||| | |||||||||| | | ||||  |||| |||||| ||||| ||  |||| ||||||||||| ||||| || ||| | |    
T  23757212 gatacgtttggtgtgaatgtgaatgtcacgtcaagggtcccatattatcttgaaggggattcgccagtata-cccttttgcatctggttagcttaattgg 23757114  T
Q  199 tggggtgaattgaacctaaatgttactgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcatcttc 278  Q
    | |||||||| ||||||||| |||| | | || |||| |  ||| ||||||||||| |||||||||||||||||||||||    
T  23757113 tagggtgaatcgaacctaaaagttagtatgtcacacataaacttcggaatttatgttcactcttcatcatgttcatcttc 23757034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 138
Target Start/End: Complemental strand, 34091587 - 34091475
Alignment:
Q  27 ttaaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccatta-tcgatacgcttggtgtgaatgtgcaagtc 125  Q
    ||||||||||  |||||||||||  | || |||||||||||| | ||||||| ||||||| ||||||||| |  ||||| ||||||||||||||||||||    
T  34091587 ttaaatcattcattcttttctctaatgcatgagagaaattgagagaactttactttgtaaactaccattaattcatacgattggtgtgaatgtgcaagtc 34091488  T
Q  126 acgtcaatgattc 138  Q
    ||||||| |||||    
T  34091487 acgtcaaggattc 34091475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 317
Target Start/End: Original strand, 37469063 - 37469178
Alignment:
Q  211 aacctaaatgttactgtatcccacacacgctttggaatttatgtgcactcttcatcatgt---------tcatcttcttgatcaagttattgcagcagat 301  Q
    |||||||| |||| ||| |||||||||| ||||| |||||||||||||  || |||||||         |||||||||||||||||||||||| ||| |     
T  37469063 aacctaaaggttagtgtgtcccacacacactttgaaatttatgtgcacatttaatcatgttcatcttcatcatcttcttgatcaagttattgctgcaaac 37469162  T
Q  302 ccccaacacaggttct 317  Q
    ||||||||||||||||    
T  37469163 ccccaacacaggttct 37469178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 24870430 - 24870526
Alignment:
Q  38 tttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtcacgtcaat 133  Q
    |||||||||||| || ||||||| ||||||| | ||||||||| ||||| ||| |||| ||| ||||||||||||| ||| || |||| ||||||||    
T  24870430 tttcttttctctagtgcacgagaaaaattgatagaactttattatgtaaactatcattgatcaatacgcttggtgtaaatatgaaagtaacgtcaat 24870526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 267
Target Start/End: Original strand, 20464024 - 20464237
Alignment:
Q  55 acgagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtcacgtcaatgattccatcgtatcatgaag 153  Q
    |||||||||||||||| || ||||||||  || | | |||| ||||||| |||||||||||||||||||||| ||| || ||||  |   |||  ||||     
T  20464024 acgagagaaattgacagaaatttattttacaaacaatcattgatcgatatgcttggtgtgaatgtgcaagtctcgttaaggattttaaaatattttgaaa 20464123  T
Q  154 gagattcaccgatataacccttttgcatttggttggcataaatagtgggg-tgaattgaacctaaatgttactgtatcccacacacgctttggaatttat 252  Q
    ||||||  ||| ||| ||| |||| |||  | ||| ||||| ||||||||  |||| |||||||||  ||| | ||||| |||| |||||||||||||||    
T  20464124 gagatttgccggtat-accatttttcatccgattgacataactagtggggacgaatcgaacctaaaaattagtatatcctacacgcgctttggaatttat 20464222  T
Q  253 gtgcactcttcatca 267  Q
     |||| |||||||||    
T  20464223 atgcattcttcatca 20464237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 1840839 - 1840930
Alignment:
Q  215 taaatgttactgtatcccacacacgctttggaatttatgtgcactcttcatcatgt------tcatcttcttgatcaagttattgcagcaga 300  Q
    |||| |||| ||||| |||||||| |||| || ||||||| |||| ||||||||||      |||||| |||||||||||||||||||||||    
T  1840839 taaaggttagtgtattccacacacactttagattttatgtccacttttcatcatgttcatcatcatctacttgatcaagttattgcagcaga 1840930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 5436972 - 5437010
Alignment:
Q  240 ctttggaatttatgtgcactcttcatcatgttcatcttc 278  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  5436972 ctttggaatttatttgcacacttcatcatgttcatcttc 5437010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 24870672 - 24870718
Alignment:
Q  271 tcatcttcttgatcaagttattgcagcagatccccaacacaggttct 317  Q
    |||||||||| ||||||||||||||||| | |||||||| |||||||    
T  24870672 tcatcttcttcatcaagttattgcagcaaacccccaacataggttct 24870718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 27 - 277
Target Start/End: Complemental strand, 48779975 - 48779724
Alignment:
Q  27 ttaaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtc 125  Q
    ||||||||||  || |||||||| || ||||| | ||| ||||||||||||||| | ||| ||| |||| || |||| ||||||||||||||||||||||    
T  48779975 ttaaatcattcattattttctctagtgcacgacataaactgacataactttattctctaaactatcattgattgatatgcttggtgtgaatgtgcaagtc 48779876  T
Q  126 acgtcaatgattccatcgtatcatgaaggagattcaccgatataacccttttgcatttggttggcataaatag-tggggtgaattgaacctaaatgttac 224  Q
    |||||||||||| ||| ||||| |||||| ||||||||||||| ||||||||||||    ||||||||| | |  | || |||| |||| |||| ||||     
T  48779875 acgtcaatgatttcatagtatcctgaaggggattcaccgatat-acccttttgcatccaattggcataactggcagaggcgaatcgaacataaaggttag 48779777  T
Q  225 tgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcatctt 277  Q
    |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||    
T  48779776 tgtatcccacacacgctttgaaatttatatgcacacttcatcatgttcatctt 48779724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 28 - 278
Target Start/End: Original strand, 20251412 - 20251663
Alignment:
Q  28 taaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtca 126  Q
    |||||||||||||||||||| | || ||||||||||||||||| ||||||||| ||||| ||| |||| |||||||| |||| ||||||||| |||| ||    
T  20251412 taaatcattatttcttttctgtagtgcacgagagaaattgacagaactttattatgtaaactatcattgatcgatacacttgatgtgaatgtacaaggca 20251511  T
Q  127 cgtcaatgattccatcgtatcatgaa-ggagattcaccgatataacccttttgcatttggttggcataaatagt-ggggtgaattgaacctaaatgttac 224  Q
    | |||||||||| ||| |||| |||| || ||||||||  ||| |||| |||||||  ||||| ||| | |||| ||||  ||| ||| |||||| |||     
T  20251512 catcaatgattcaatcatatcctgaagggggattcaccagtat-acccctttgcatccggttgacattactagtaggggcaaatggaatctaaatattag 20251610  T
Q  225 tgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcatcttc 278  Q
    ||| | | |||||||||||| |||||||||| ||||||||||||||||||||||    
T  20251611 tgtgt-ctacacacgctttgaaatttatgtgtactcttcatcatgttcatcttc 20251663  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 24391837 - 24391989
Alignment:
Q  28 taaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccattatcgatacgcttggtgtgaatgtgcaagtcac 127  Q
    ||||||||| |||||||||||| || || |||||||||||||||||||||||| ||||| ||| |||| |||||||| |||||||| |||||||||||||    
T  24391837 taaatcattctttcttttctctagtgcatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtg-atgtgcaagtcac 24391935  T
Q  128 gtcaatgattccatcgtatcatgaaggagattcaccgatataacccttttgcat 181  Q
      ||| |||||||| ||||| |||||| ||||| ||| ||||||||||||||||    
T  24391936 accaaggattccattgtatcttgaaggggattcgccggtataacccttttgcat 24391989  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 3425182 - 3425227
Alignment:
Q  271 tcatcttcttgatcaagttattgcagcagatccccaacacaggttc 316  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  3425182 tcatcttcttggtcaagttattgcagcagatccccaacacaggttc 3425227  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 3415594 - 3415679
Alignment:
Q  240 ctttggaatttatgtgcactcttcatcatgt---------tcatcttcttgatcaagttattgcagcagatccccaacacaggttc 316  Q
    ||||||||||||||||||| |||||||||||         ||||||||||| |||||||||||||||||| |||||||||| ||||    
T  3415594 ctttggaatttatgtgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccccaacacaagttc 3415679  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 30020332 - 30020372
Alignment:
Q  271 tcatcttcttgatcaagttattgcagcagatccccaacaca 311  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  30020332 tcatcttcttggtcaagttattgcagcagatcccaaacaca 30020372  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 24129457 - 24129335
Alignment:
Q  28 taaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccat-tatcgatacgcttggtgtga--atgtgcaagt 124  Q
    |||||| || |||||||||||| || ||||  ||||||||||||||||||||| ||||| ||| |||  | |||| || |||||||||  || | |||||    
T  24129457 taaatctttctttcttttctctagtgcacggaagaaattgacataactttattatgtaaactatcatcaaccgatgcgtttggtgtgaatatatacaagt 24129358  T
Q  125 cacgtcaatgattccatcgtatc 147  Q
    |||||| |  |||||||||||||    
T  24129357 cacgtcgaaaattccatcgtatc 24129335  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 3425142 - 3425180
Alignment:
Q  240 ctttggaatttatgtgcactcttcatcatgttcatcttc 278  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  3425142 ctttggaatttatgtgcacactttatcatgttcatcttc 3425180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 24129241 - 24129195
Alignment:
Q  229 tcccacacacgctttggaatttatgtgcactcttcatcatgttcatc 275  Q
    |||| |||| ||||||||||||||||||||| |||||||| ||||||    
T  24129241 tcccgcacatgctttggaatttatgtgcacttttcatcatattcatc 24129195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 32429726 - 32429764
Alignment:
Q  240 ctttggaatttatgtgcactcttcatcatgttcatcttc 278  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  32429726 ctttagaatttatgtgcacacttcatcatgttcatcttc 32429764  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 18670603 - 18670566
Alignment:
Q  240 ctttggaatttatgtgcactcttcatcatgttcatctt 277  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  18670603 ctttgaaatttatgtgcacacttcatcatgttcatctt 18670566  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 18736921 - 18736884
Alignment:
Q  240 ctttggaatttatgtgcactcttcatcatgttcatctt 277  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  18736921 ctttggaatttatgtgcacacttcatcaagttcatctt 18736884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 18736881 - 18736841
Alignment:
Q  271 tcatcttcttgatcaagttattgcagcagatccccaacaca 311  Q
    |||||||||||| ||||||||| ||||||| ||||||||||    
T  18736881 tcatcttcttgaccaagttattacagcagacccccaacaca 18736841  T

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Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 31 - 298
Target Start/End: Original strand, 11931960 - 11932227
Alignment:
Q  31 atcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccattatcgatacgcttggtgtgaatgtgcaagtcacgtc 130  Q
    |||||| |||||||| ||| || |||||||||| |||||| || |||||| | ||| |||||||| ||||||  ||||||||||||  ||||||||| ||    
T  11931960 atcattctttcttttatctagtgcacgagagaatttgacagaattttattctataaactaccattgtcgataaacttggtgtgaataagcaagtcacatc 11932059  T
Q  131 aatgattccatcgtatcatgaaggagattcaccgatataacccttttgcatttggttggcataaatagt-ggggtgaattgaacctaaatgttactgtat 229  Q
    || |||| ||||||||| |||||| | ||| | | ||||||||||||||||  ||||||||||| |||| |||| ||||  |||||||| |||| ||| |    
T  11932060 aaggatttcatcgtatcctgaagg-ggttcgctggtataacccttttgcatccggttggcataactagtgggggcgaatcaaacctaaaggttagtgtgt 11932158  T
Q  230 cccacacacgctttggaatttatgtgcactcttcatcatgttcatcttcttgatcaagttattgcagca 298  Q
    || ||||| |||||| |||||||||||||||  | || |  |||||||||| |||||||||||||||||    
T  11932159 ccaacacatgctttgaaatttatgtgcactccacttcttcatcatcttcttcatcaagttattgcagca 11932227  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 298
Target Start/End: Complemental strand, 28612260 - 28611983
Alignment:
Q  28 taaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtca 126  Q
    ||||||||| |||||| ||||| || |||||| | |||||||| ||| || |||||||  |||||||| | ||||| ||||||||||||||| |||||||    
T  28612260 taaatcattctttcttatctctagtgcacgaggggaattgacagaacattgttttgtatactaccattgaacgatatgcttggtgtgaatgtacaagtca 28612161  T
Q  127 cgtcaatgattccatcgtatcatgaaggagattcaccgatataacccttttgcatttggttggcataaatagtgggg-tgaattgaacctaaatgttact 225  Q
    |||||| |||||||| ||||  |||||| ||||| ||||||| ||| |||| |||   |||| ||||| | ||||||   ||| ||||||||| |||| |    
T  28612160 cgtcaaggattccattgtattctgaaggggattcgccgatat-accattttacatactgttgacataactggtggggaaaaatcgaacctaaaggtta-t 28612063  T
Q  226 gtatcccacacacgctttggaatttatgtgcactcttcatcatgt---------tcatcttcttgatcaagttattgcagca 298  Q
    || | |||||||  ||||  ||||||||||||| |||||||||||         ||||||||||||||||||||||||||||    
T  28612062 gtgttccacaca--ctttaaaatttatgtgcacacttcatcatgttcatattcatcatcttcttgatcaagttattgcagca 28611983  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 24075669 - 24075623
Alignment:
Q  271 tcatcttcttgatcaagttattgcagcagatccccaacacaggttct 317  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  24075669 tcatcttcttaatcaagttattgcagcagacccctaacacaggttct 24075623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 278
Target Start/End: Complemental strand, 14219000 - 14218750
Alignment:
Q  28 taaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtca 126  Q
    ||||||||| |||||||||||| || ||||||  ||||||| | ||||||||||||||| ||| |||| || |||||| ||||||||||||| || ||||    
T  14219000 taaatcattctttcttttctctagtgcacgaggaaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtgaatgtacatgtca 14218901  T
Q  127 cgtcaatgattccatcgtatcatgaaggagattcaccgatataacccttttgcatttggttggcataaatagtggggtgaattgaacctaaatgttactg 226  Q
     |||| |||||| || ||||| |||||||||||||  ||||| || |||||||||   |||| ||||| | |||||  |||| ||||||||| |||| |     
T  14218900 agtcagtgattctatagtatcttgaaggagattcattgatat-actcttttgcatccagttgacataactggtgggacgaatcgaacctaaaagttagtt 14218802  T
Q  227 tatcccacacacgctttggaatttatgtgcactcttcatcatgttcatcttc 278  Q
    | ||  |||||| ||||  ||||||||||||||  |||||||||||| ||||    
T  14218801 tgtctaacacacacttttaaatttatgtgcacttgtcatcatgttcaccttc 14218750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 294
Target Start/End: Complemental strand, 34681207 - 34680955
Alignment:
Q  38 tttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtcacgtcaatgat 136  Q
    |||||||||||||||  |||||||||||||||| |||||||||  |||| ||| |||| ||||||||||||| |||||||||||||     |||||  ||    
T  34681207 tttcttttctctggtgaacgagagaaattgacaaaactttattacgtaaactatcattgatcgatacgcttgatgtgaatgtgcaa-----gtcaagaat 34681113  T
Q  137 tccatcgtatcatgaaggagattcaccgatataacccttttgcatttggttggcataaatagtggg-gtgaattgaacctaaatgttactgtatcccaca 235  Q
    | ||| ||||| ||||   ||||| |  |||| | |||||||||  | |||||||||| |  |||| |  ||| ||||||||| |||| |||| ||||||    
T  34681112 ttcatagtatcctgaaaaggattcgcttatat-atccttttgcacctagttggcataactgatgggagcaaatcgaacctaaaagttagtgtaccccaca 34681014  T
Q  236 cacgctttggaatttatgtgcactcttcatcatgttcatcttcttgatcaagttattgc 294  Q
    || |||||  |||| ||||||| |||||||||||||||||||||| |||||||||||||    
T  34681013 catgcttttaaattcatgtgcagtcttcatcatgttcatcttcttaatcaagttattgc 34680955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 38327475 - 38327394
Alignment:
Q  57 gagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtcacgtcaatgatt 137  Q
    ||||||||||| || ||||||||| |||||  ||||||| |||||| || |||||||||||||| |||||||||||| ||||    
T  38327475 gagagaaattgccaaaactttattatgtaaattaccattgatcgatgcgtttggtgtgaatgtgtaagtcacgtcaaggatt 38327394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 42779917 - 42779878
Alignment:
Q  271 tcatcttcttgatcaagttattgcagcagatccccaacaca 311  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  42779917 tcatcttcttggtcaagttattgcagcaga-ccccaacaca 42779878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 217751 - 217870
Alignment:
Q  28 taaatcattatttcttttctctggtacacgagagaaattgacataactttattttgtaatctaccatt-atcgatacgcttggtgtgaatgtgcaagtca 126  Q
    ||||| ||| |||||||||||| || |||||||||||||| || ||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||     
T  217751 taaataattctttcttttctctagttcacgagagaaattggcagaacattattttgtaaactaccattgatcgatacacttggtgtgaatgtgcaagtct 217850  T
Q  127 cgtcaatgattccatcgtat 146  Q
    | |||| |||| ||||||||    
T  217851 cttcaaggatttcatcgtat 217870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 217944 - 217991
Alignment:
Q  229 tcccacacacgctttggaatttatgtgcactcttcatcatgttcatcttc 278  Q
    ||||||||||  ||||||||||||||||||| ||||| ||||||||||||    
T  217944 tcccacacac--tttggaatttatgtgcactattcattatgttcatcttc 217991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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