View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0806_low_15 (Length: 305)

Name: NF0806_low_15
Description: NF0806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0806_low_15
NF0806_low_15
[»] chr6 (16 HSPs)
chr6 (29-305)||(7993738-7994014)
chr6 (29-180)||(6432543-6432694)
chr6 (56-205)||(7131984-7132133)
chr6 (29-212)||(6403241-6403424)
chr6 (105-238)||(6602837-6602970)
chr6 (102-205)||(19632785-19632888)
chr6 (58-239)||(6596531-6596712)
chr6 (58-214)||(6594188-6594344)
chr6 (59-205)||(6588918-6589064)
chr6 (107-211)||(6426854-6426958)
chr6 (63-127)||(8913659-8913723)
chr6 (29-195)||(6423594-6423760)
chr6 (140-233)||(6410345-6410438)
chr6 (144-205)||(10579426-10579487)
chr6 (140-210)||(14821052-14821122)
chr6 (140-180)||(6395238-6395278)
[»] chr1 (6 HSPs)
chr1 (29-235)||(33160844-33161050)
chr1 (29-205)||(29658509-29658685)
chr1 (29-205)||(29691024-29691200)
chr1 (29-205)||(29718536-29718712)
chr1 (29-203)||(30827467-30827641)
chr1 (96-205)||(19468128-19468237)
[»] chr4 (6 HSPs)
chr4 (83-212)||(55908335-55908464)
chr4 (96-285)||(547203-547392)
chr4 (59-211)||(3438235-3438387)
chr4 (96-166)||(1600810-1600880)
chr4 (55-205)||(53761367-53761517)
chr4 (59-128)||(21833970-21834039)
[»] chr2 (1 HSPs)
chr2 (83-212)||(1037271-1037400)
[»] chr5 (4 HSPs)
chr5 (55-205)||(20477670-20477814)
chr5 (59-206)||(28532074-28532221)
chr5 (58-206)||(41889136-41889284)
chr5 (63-127)||(12846038-12846102)
[»] chr8 (1 HSPs)
chr8 (83-211)||(17627666-17627794)
[»] scaffold0262 (1 HSPs)
scaffold0262 (75-212)||(280-417)
[»] chr7 (4 HSPs)
chr7 (96-202)||(15091774-15091880)
chr7 (99-205)||(10169762-10169868)
chr7 (99-205)||(10177287-10177393)
chr7 (59-127)||(10615035-10615103)
[»] chr3 (2 HSPs)
chr3 (65-202)||(514317-514454)
chr3 (58-205)||(51764031-51764178)


Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 29 - 305
Target Start/End: Original strand, 7993738 - 7994014
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7993738 atacaacatttagatcttaatggtatttattttctgaatgatctacatgttgctgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 7993837  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggag 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7993838 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggag 7993937  T
Q  229 tgtagagaatttcaatttcttgatggattttcctccaagccctcaattgaagtctctttgtttagctctctgtcaac 305  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7993938 tgtagagaatttcaatttcttgacggattttcctccaagccctcaattgaagtctctttgtttagctctctgtcaac 7994014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 6432694 - 6432543
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    ||||||||||| ||||||  |||  || ||||||| ||||||| ||||||||||| || ||| ||  |||||| |||||||||||||||||||||||||     
T  6432694 atacaacatttggatctttgtggacttcattttctaaatgatcaacatgttgccgggtcgtctttgtttcttgctgatttggtgtctataaaccttagta 6432595  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtcc 180  Q
    | |||||    ||||||||||||||| |||||||||||||| ||||||||||    
T  6432594 attgtcgatatctcacagaatcagccctgttttcactcgttggaaactgtcc 6432543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 205
Target Start/End: Complemental strand, 7132133 - 7131984
Alignment:
Q  56 tattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagcct 155  Q
    |||||||||||||||  ||||||| | |||||||| |   ||||| |||| ||  ||||| |||||||| |||| ||| ||||||||||||||| |||||    
T  7132133 tattttctgaatgatgaacatgtttctgagttgtcttggtttcttcgtgacttactgtctgtaaaccttcgtgactgttggatgctcacagaattagcct 7132034  T
Q  156 tgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
    ||| |||||||||||||||||| || |||||| ||||  |||||||||||    
T  7132033 tgtattcactcgttagaaactgcccttcacttagtgagttcaaaatggaa 7131984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 212
Target Start/End: Complemental strand, 6403424 - 6403241
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    ||||||||||| |||||||||  || |||||||||||||||| |||||||||| ||||| || ||  ||||   ||| ||||||||||||||||||| |     
T  6403424 atacaacatttggatcttaataacagttattttctgaatgatttacatgttgctgagttttctttgtttctacatgagttggtgtctataaaccttaatt 6403325  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaa 212  Q
     ||||  |||||| | | ||||| |||||||||||||| ||   || ||||| |||||  |||||||||||||||||| |||||    
T  6403324 catgtttgatgcttagaaaatcaaccttgttttcactcctttcgaattgtccttcactcagtgaaatcaaaatggaacacacaa 6403241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 6602837 - 6602970
Alignment:
Q  105 atttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatgga 204  Q
    |||||||||||||||||||||||||||||      |||||||||| | ||||||||||||| |||| ||||||||| |||||| |||| |||||||||||    
T  6602837 atttggtgtctataaaccttagtgaatgttcctacctcacagaattatccttgttttcacttgttaaaaactgtccttcacttagtgagatcaaaatgga 6602936  T
Q  205 acgcacaaatgttgggatagggagtgtagagaat 238  Q
    |  |||| || |||||| || || ||||||||||    
T  6602937 agacacagatattgggaaagagaatgtagagaat 6602970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 205
Target Start/End: Complemental strand, 19632888 - 19632785
Alignment:
Q  102 gtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaat 201  Q
    |||||||||||||||| ||||||| ||| ||| ||| ||||||||||| | | |||||||| |||||||| || ||||| |||||| |||| ||||||||    
T  19632888 gtgatttggtgtctatcaaccttaatgactgttggaagctcacagaattatcattgttttcgctcgttagtaattgtccttcacttagtgagatcaaaat 19632789  T
Q  202 ggaa 205  Q
    ||||    
T  19632788 ggaa 19632785  T

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Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 239
Target Start/End: Original strand, 6596531 - 6596712
Alignment:
Q  58 ttttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttg 157  Q
    |||||| ||||||  ||||||||| | ||| || ||  |||||||||||||||| ||||||||||||| | | |||   | |||||||||||||||| ||    
T  6596531 ttttcttaatgatacacatgttgctgggttctctttgtttcttggtgatttggtttctataaaccttaatcattgttcaaggctcacagaatcagccgtg 6596630  T
Q  158 ttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatt 239  Q
    ||||| ||||| ||||| ||||| || ||| |||| ||||||||| ||  ||||  | ||||||  | ||||||||||||||    
T  6596631 ttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatgcaaaacacagctattgggacggagagtgtagagaatt 6596712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 214
Target Start/End: Original strand, 6594188 - 6594344
Alignment:
Q  58 ttttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttg 157  Q
    |||||||||||||| |||||||||||||||||| ||  |||||| || ||||  ||| || |||||||||   ||       |||||||||||||| |||    
T  6594188 ttttctgaatgatcaacatgttgccgagttgtctttgtttcttgctggtttgaagtccattaaccttagttcttgcaaccatctcacagaatcagctttg 6594287  T
Q  158 ttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaat 214  Q
    |||||||| |||||||  ||||| | |||| |||| ||||||||||| |||||||||    
T  6594288 ttttcacttgttagaagttgtcctttacttagtgatatcaaaatggagcgcacaaat 6594344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 205
Target Start/End: Original strand, 6588918 - 6589064
Alignment:
Q  59 tttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgt 158  Q
    ||||||||||||| |||||||| ||| ||||| |   |||||||||||||||||||  ||||||||||| | ||  | | | ||||||||||||| ||||    
T  6588918 tttctgaatgatcaacatgttgtcgaattgtcttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgt 6589017  T
Q  159 tttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
    || |||| | ||| || ||||| | |||| |||| |||| |||||||    
T  6589018 ttgcacttgctaggaagtgtcctttacttggtgagatcacaatggaa 6589064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 6426958 - 6426854
Alignment:
Q  107 ttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaac 206  Q
    ||||||||||||||||||||||  ||||     ||||||||| || | ||||||||||| |||||||||||||| ||| || |||| || |||||||||     
T  6426958 ttggtgtctataaaccttagtggttgtcatcatctcacagaaacaacattgttttcacttgttagaaactgtccttcaattagtgagattaaaatggaag 6426859  T
Q  207 gcaca 211  Q
    |||||    
T  6426858 gcaca 6426854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 8913659 - 8913723
Alignment:
Q  63 tgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagt 127  Q
    ||||||||| |||||||| | ||||||| ||  |||||||| |||||||||||||||||||||||    
T  8913659 tgaatgatcaacatgttgtcaagttgtctttgtttcttggtaatttggtgtctataaaccttagt 8913723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 6423760 - 6423594
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    |||||||||||  ||||| |  |||||||||||||||| |||| ||||||||  ||||| || ||   | | ||| |||| |||||||||| ||| | ||    
T  6423760 atacaacatttgaatcttgactgcatttattttctgaaggatcaacatgttgttgagttatctttttatatgggtaatttagtgtctataagcctcaatg 6423661  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaat 195  Q
    | |||    | ||| ||||| || | |||||||||||||||||||||||||| |||||| |||||||    
T  6423660 attgttatcttctcgcagaaacaactttgttttcactcgttagaaactgtccttcacttagtgaaat 6423594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 6410438 - 6410345
Alignment:
Q  140 ctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtag 233  Q
    |||||||||| ||||  |||||||||||||||||| ||||| ||||||  ||| ||||||||| || | |||| | |||||| || ||||||||    
T  6410438 ctcacagaattagcccagttttcactcgttagaaattgtccttcacttaatgagatcaaaatgaaaagaacaagtattgggaaagagagtgtag 6410345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 10579426 - 10579487
Alignment:
Q  144 cagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
    ||||||||||||||||||| ||||| ||||| ||||| || ||| |||| ||||||||||||    
T  10579426 cagaatcagccttgttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatggaa 10579487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 14821122 - 14821052
Alignment:
Q  140 ctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcac 210  Q
    ||||||||| || ||||||||||||||||||| ||||||   ||||||  |||| ||||||||||| ||||    
T  14821122 ctcacagaaacaaccttgttttcactcgttaggaactgttattcacttattgaagtcaaaatggaatgcac 14821052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 6395278 - 6395238
Alignment:
Q  140 ctcacagaatcagccttgttttcactcgttagaaactgtcc 180  Q
    ||||||||| || |||| |||||||||||||||||||||||    
T  6395278 ctcacagaaacaacctttttttcactcgttagaaactgtcc 6395238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 29 - 235
Target Start/End: Complemental strand, 33161050 - 33160844
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    |||||| |||| ||||| |||  || ||||||||||||||||| ||||||||||||||| || ||  |||||| || |||||||||||||||||||| ||    
T  33161050 atacaatatttggatctaaatcacacttattttctgaatgatcaacatgttgccgagttctctttgtttcttgctgctttggtgtctataaaccttaatg 33160951  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggag 228  Q
     |||| ||| ||||||||||||||| ||||||||||| |||| ||||||||| |||||| |||| |||||||||||| |||||| | |||||| || |||    
T  33160950 gatgttggaggctcacagaatcagcattgttttcacttgttacaaactgtccttcacttagtgacatcaaaatggaatgcacaactattgggaaagagag 33160851  T
Q  229 tgtagag 235  Q
    | |||||    
T  33160850 tatagag 33160844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 205
Target Start/End: Original strand, 29658509 - 29658685
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    ||||||||||| ||||||| | ||| | | ||||| ||||||| ||||||||||||||| || ||  |||||| | ||||||||||||||||||||| ||    
T  29658509 atacaacatttggatcttagtcgcactaagtttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactg 29658608  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
     |||| ||| ||| ||||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29658609 gatgttggaagctgacagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29658685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 205
Target Start/End: Original strand, 29691024 - 29691200
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    ||||||||||| ||||||| |  || | ||||||| ||||||| ||||||||||||||| || ||  |||||| | ||||||||||||||||||||| ||    
T  29691024 atacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactg 29691123  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
     |||| ||| ||| ||||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29691124 gatgttggaagctgacagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29691200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 205
Target Start/End: Original strand, 29718536 - 29718712
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    ||||||||||| ||||||| |  || | ||||||| ||||||| ||||||||||||||| || ||  |||||| | ||||||||||||||||||||| ||    
T  29718536 atacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactg 29718635  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
     |||| ||| ||| ||||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29718636 gatgttggaagctgacagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29718712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 30827641 - 30827467
Alignment:
Q  29 atacaacatttagatcttaatggcatttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    ||||||||||| ||||||| |  || || |||||| ||||||| |||||||||||| || || || ||||||  | |||| |||||||||||||||| |     
T  30827641 atacaacatttggatcttagtttcacttgttttctcaatgatcaacatgttgccgacttctctttgcttcttcctcatttagtgtctataaaccttactc 30827542  T
Q  129 aatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatgg 203  Q
     |||| ||| ||| ||||||||||| |||||||| ||||||| ||| ||||| ||||||  ||| ||||||||||    
T  30827541 gatgttggaagctaacagaatcagctttgttttcgctcgttacaaattgtccttcacttactgacatcaaaatgg 30827467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 19468128 - 19468237
Alignment:
Q  96 ttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaat 195  Q
    ||||||||||||| ||||||||||||||||||||||||  |   |||||| | ||| |||||||| |||||||||| || ||||| |||||| |||| ||    
T  19468128 ttcttggtgatttagtgtctataaaccttagtgaatgtatggacctcacatattcaaccttgtttacactcgttaggaattgtccttcacttagtgagat 19468227  T
Q  196 caaaatggaa 205  Q
    ||||||||||    
T  19468228 caaaatggaa 19468237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 55908335 - 55908464
Alignment:
Q  83 gagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccat 182  Q
    |||||||| ||  |||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||| ||||| |||||||||| || ||||| |    
T  55908335 gagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcactcgttaggaattgtcctt 55908434  T
Q  183 cacttcgtgaaatcaaaatggaacgcacaa 212  Q
    |||||  |||  |||||||||||| |||||    
T  55908435 cacttattgaggtcaaaatggaacacacaa 55908464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 285
Target Start/End: Complemental strand, 547392 - 547203
Alignment:
Q  96 ttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaat 195  Q
    ||||||||||||||| || ||||||||||||| | ||| ||   |||||| | | |||||||||| |||||||||| || ||| | |||||| |||| ||    
T  547392 ttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagat 547293  T
Q  196 caaaatggaacgcacaaatgttgggatagggagtgtagagaatttcaatttcttgatggattttcctccaagccctcaattgaagtctct 285  Q
    ||||||||||| ||||||  ||||||| | ||||||||||||||  ||||  || | |||||||  |  |||||||||||||||||||||    
T  547292 caaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctct 547203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 59 - 211
Target Start/End: Original strand, 3438235 - 3438387
Alignment:
Q  59 tttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgt 158  Q
    ||||| |||||||  ||||||| | |||||||  |  ||| |||||||||||||||||||||||||||||| |||  |||||||||| ||| |||||| |    
T  3438235 tttctaaatgatcgccatgttgtcaagttgtccatgtttcatggtgatttggtgtctataaaccttagtgattgttcgatgctcacaaaattagccttat 3438334  T
Q  159 tttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcaca 211  Q
    |||||||| |||| || ||||| |||||| |||| || ||||||||| |||||    
T  3438335 tttcactcattagtaattgtccttcacttagtgagataaaaatggaatgcaca 3438387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 1600880 - 1600810
Alignment:
Q  96 ttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactc 166  Q
    |||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| |||||    
T  1600880 ttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 1600810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 205
Target Start/End: Original strand, 53761367 - 53761517
Alignment:
Q  55 ttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagcc 154  Q
    ||||||||||||  ||| ||||||||   | ||||| || |||||||||||||||||||| ||||||||||||   |||   | | ||||| |||  |||    
T  53761367 ttattttctgaacaatcaacatgttgtaaatttgtctttgcttcttggtgatttggtgtccataaaccttagtcgttgttataagatcacaaaattggcc 53761466  T
Q  155 ttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
    |||||| |||| | || ||||||||| |||||| |||| ||||||||||||    
T  53761467 ttgtttgcacttgctaaaaactgtccttcacttagtgagatcaaaatggaa 53761517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 21833970 - 21834039
Alignment:
Q  59 tttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtg 128  Q
    ||||||||||||| |||||||| | ||||||  | | |||||||||||||| | || |||||||||||||    
T  21833970 tttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtg 21834039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 1037271 - 1037400
Alignment:
Q  83 gagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccat 182  Q
    |||||||| ||  |||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||| ||||| |||||||||| || ||||| |    
T  1037271 gagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcactcgttaggaattgtcctt 1037370  T
Q  183 cacttcgtgaaatcaaaatggaacgcacaa 212  Q
    |||||  |||  |||||||||||| |||||    
T  1037371 cacttattgaggtcaaaatggaacacacaa 1037400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 205
Target Start/End: Original strand, 20477670 - 20477814
Alignment:
Q  55 ttattttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagcc 154  Q
    ||||||||||||||||| || ||||||||||||||      ||||||  ||||||||||||||||| |||||||| |||  |   |||||||||| ||||    
T  20477670 ttattttctgaatgatcaacttgttgccgagttgt------ttcttgcggatttggtgtctataaatcttagtgattgtttgcatctcacagaattagcc 20477763  T
Q  155 ttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
    |||| |||||| |||||||||||||| |||||| |||| ||||||||||||    
T  20477764 ttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaa 20477814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 28532221 - 28532074
Alignment:
Q  59 tttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgt 158  Q
    ||||||||||||| |||||||  | ||||||| |   |||||||||||||| |||| || ||||||||| | |||   | ||| ||||||||| | ||||    
T  28532221 tttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccatcaaccttagtaattgtgataagctaacagaatcatctttgt 28532122  T
Q  159 tttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaac 206  Q
    || |||||| ||| |||||||| | |||| |||| |||| ||||||||    
T  28532121 ttgcactcgctaggaactgtcctttacttggtgagatcacaatggaac 28532074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 206
Target Start/End: Original strand, 41889136 - 41889284
Alignment:
Q  58 ttttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttg 157  Q
    |||||||||| ||  ||||||||  |||||||| | | |||||||||||||||| ||||||||| | | | | |||  ||| |||||||||||||| ||     
T  41889136 ttttctgaatcataaacatgttgtggagttgtcttcatttcttggtgatttggtatctataaacttgaatcattgttcgatactcacagaatcagcattc 41889235  T
Q  158 ttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaac 206  Q
    ||| ||||  |||  || ||||| |||||| |||  |||||||||||||    
T  41889236 tttgcacttcttaagaattgtccttcactttgtgttatcaaaatggaac 41889284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 12846102 - 12846038
Alignment:
Q  63 tgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagt 127  Q
    ||||||||| |||||||||  |||| || || ||||||||||||||| | ||||||||| |||||    
T  12846102 tgaatgatcaacatgttgctaagttatctttgcttcttggtgatttgatttctataaacgttagt 12846038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 83 - 211
Target Start/End: Original strand, 17627666 - 17627794
Alignment:
Q  83 gagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccat 182  Q
    |||||||| | | |||||||| ||||||||||| ||||||||||| | ||||||||||||   |||||||||||||||||||||||||| || ||||| |    
T  17627666 gagttgtcttcatttcttggtaatttggtgtctgtaaaccttagttattgtcggatgctcgacgaatcagccttgttttcactcgttagtaaatgtcctt 17627765  T
Q  183 cacttcgtgaaatcaaaatggaacgcaca 211  Q
    |||||  ||| || ||||||||| |||||    
T  17627766 cacttaatgagataaaaatggaatgcaca 17627794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 75 - 212
Target Start/End: Complemental strand, 417 - 280
Alignment:
Q  75 atgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaa 174  Q
    ||||||| |||||||| ||  ||||||| ||||||||||||||||| |||||||||||| | ||||||||| | ||| || ||||| |||||||||| ||    
T  417 atgttgcagagttgtctttgtttcttggcgatttggtgtctataaatcttagtgaatgtagcatgctcacatactcaaccatgtttgcactcgttaggaa 318  T
Q  175 ctgtccatcacttcgtgaaatcaaaatggaacgcacaa 212  Q
     | ||| ||||||  ||| ||||||||||||| |||||    
T  317 ttatccttcacttattgagatcaaaatggaacacacaa 280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 15091774 - 15091880
Alignment:
Q  96 ttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaat 195  Q
    ||||| || ||||||||||||||||||||| ||  ||||| |  ||||||||| || ||||||||||||||| |||||||||||| || |||  ||||||    
T  15091774 ttcttagtaatttggtgtctataaaccttaatgcttgtcgtaatctcacagaaacaaccttgttttcactcggtagaaactgtccttcgcttattgaaat 15091873  T
Q  196 caaaatg 202  Q
    |||||||    
T  15091874 caaaatg 15091880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 10169762 - 10169868
Alignment:
Q  99 ttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaa 198  Q
    |||||||||| |||||| ||||||||||| |||||  |  | ||||| | ||| |||||||| |||||||||| || ||||| |||||| |||| |||||    
T  10169762 ttggtgatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgcactcgttaggaattgtccttcacttagtgagatcaa 10169861  T
Q  199 aatggaa 205  Q
    |||||||    
T  10169862 aatggaa 10169868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 10177287 - 10177393
Alignment:
Q  99 ttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaa 198  Q
    |||||||||| |||||| ||||||||||| |||||  |  | ||||| | ||| |||||||| |||||||||| || ||||| |||||| |||| |||||    
T  10177287 ttggtgatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgcactcgttaggaattgtccttcacttagtgagatcaa 10177386  T
Q  199 aatggaa 205  Q
    |||||||    
T  10177387 aatggaa 10177393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 10615103 - 10615035
Alignment:
Q  59 tttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagt 127  Q
    ||||||||||||| |||||||| | | ||||| | | |||||||||||||| |||| ||||||||||||    
T  10615103 tttctgaatgatcaacatgttgtccaattgtcttcatttcttggtgatttgatgtccataaaccttagt 10615035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 202
Target Start/End: Original strand, 514317 - 514454
Alignment:
Q  65 aatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcac 164  Q
    ||||||| ||||||||  || ||||||||  |||||||| ||||| ||||||||||| | ||  |||||   ||||||||| | | | |||||||| |||    
T  514317 aatgatcaacatgttgtggatttgtcattgtttcttggtcatttgttgtctataaacttgagcaaatgttcaatgctcacacatttatccttgtttgcac 514416  T
Q  165 tcgttagaaactgtccatcacttcgtgaaatcaaaatg 202  Q
    | ||||  |||||||| |||||| |||| |||||||||    
T  514417 ttgttaagaactgtccttcacttagtgagatcaaaatg 514454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 205
Target Start/End: Original strand, 51764031 - 51764178
Alignment:
Q  58 ttttctgaatgatctacatgttgccgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttg 157  Q
    ||||||||||||| |||||||||   | ||||| ||  ||||| || |||||||||| |||||||||||||  ||||  | ||||||  |||||||||||    
T  51764031 ttttctgaatgatatacatgttgtaaatttgtctttgtttcttagtaatttggtgtccataaaccttagtggttgtcctaagctcaccaaatcagccttg 51764130  T
Q  158 ttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 205  Q
     || | || | |||  | ||||| |||||| |||| ||||||||||||    
T  51764131 cttactcttgctaggtattgtccttcacttggtgagatcaaaatggaa 51764178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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