View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0806_low_17 (Length: 251)

Name: NF0806_low_17
Description: NF0806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0806_low_17
NF0806_low_17
[»] chr5 (9 HSPs)
chr5 (118-251)||(37412926-37413059)
chr5 (114-228)||(37824248-37824362)
chr5 (114-201)||(37640225-37640312)
chr5 (114-201)||(37400532-37400619)
chr5 (114-201)||(37436060-37436147)
chr5 (114-201)||(37533453-37533540)
chr5 (114-201)||(37711977-37712064)
chr5 (114-201)||(37703021-37703108)
chr5 (132-201)||(37594695-37594764)
[»] chr3 (1 HSPs)
chr3 (114-228)||(14553463-14553577)
[»] chr4 (1 HSPs)
chr4 (123-203)||(24217458-24217538)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 118 - 251
Target Start/End: Complemental strand, 37413059 - 37412926
Alignment:
Q  118 tgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttattatttaaatccacaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  37413059 tgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatttaacattttattatttaaatccacaat 37412960  T
Q  218 actcaattttggatattgggccaactaatttatt 251  Q
    ||||||||||||||||||||||||||||||||||    
T  37412959 actcaattttggatattgggccaactaatttatt 37412926  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 37824248 - 37824362
Alignment:
Q  114 cctgtgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttattatttaaatcca 213  Q
    ||||||||||||||||| ||||||  ||||||||| || |||  |||| ||||||||||||| ||| ||||||||| ||||||||||    |||||||||    
T  37824248 cctgtgaggtggttgtcgctgaggcccaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttaaagcttaaatcca 37824347  T
Q  214 caatactcaattttg 228  Q
    |||||||||||||||    
T  37824348 caatactcaattttg 37824362  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 37640225 - 37640312
Alignment:
Q  114 cctgtgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttat 201  Q
    |||||||| | |||||||||||||||||||||||| || |||  |||| ||||||||||||| ||| ||||||||| |||||||||||    
T  37640225 cctgtgagattgttgtcactgaggtacaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttat 37640312  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 37400619 - 37400532
Alignment:
Q  114 cctgtgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttat 201  Q
    |||||||| | |||||  ||||||||||||||||| || |||  |||| ||||||||||||| ||| ||||||||| |||||||||||    
T  37400619 cctgtgagattgttgttgctgaggtacaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttat 37400532  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 37436060 - 37436147
Alignment:
Q  114 cctgtgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttat 201  Q
    |||||||| ||||||| |  ||||||||||||||| || |||  ||||||||||||||| || ||| ||||||||| |||||||||||    
T  37436060 cctgtgagatggttgtaatggaggtacaactctaacaatgaaggcaaataataacaccactgtggaattgttccatttaacatgttat 37436147  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 37533453 - 37533540
Alignment:
Q  114 cctgtgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttat 201  Q
    ||||||||||||||||  |||||||  |||||||| || |||  |||| ||||||||||||| ||| ||||||||| |||||||||||    
T  37533453 cctgtgaggtggttgttgctgaggtgtaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttat 37533540  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 37711977 - 37712064
Alignment:
Q  114 cctgtgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttat 201  Q
    ||||||||||||||||| ||||||  ||||||||| || |||  |||| |||||||||| || ||| ||||||||| |||||||||||    
T  37711977 cctgtgaggtggttgtcgctgaggcccaactctaacaatgaaggcaaagaataacaccactgtggaattgttccatttaacatgttat 37712064  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 37703021 - 37703108
Alignment:
Q  114 cctgtgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttat 201  Q
    ||||||||||||||||| | ||||  |||| |||| || |||  |||| ||||||||||||| ||| ||||||||| |||||||||||    
T  37703021 cctgtgaggtggttgtcgccgaggaccaaccctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttat 37703108  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 37594695 - 37594764
Alignment:
Q  132 ctgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttat 201  Q
    ||||||||||| ||||| || |||  |||| ||||||||||||| ||| ||||||||| |||||||||||    
T  37594695 ctgaggtacaattctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttat 37594764  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 14553463 - 14553577
Alignment:
Q  114 cctgtgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttattatttaaatcca 213  Q
    ||||||||||||||||| |||||| | |||||||| || |||  |||| ||||||||||||| ||| ||||||||| ||||||||||| | |||||||||    
T  14553463 cctgtgaggtggttgtcgctgagggataactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttataacttaaatcca 14553562  T
Q  214 caatactcaattttg 228  Q
    ||   ||||||||||    
T  14553563 catagctcaattttg 14553577  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 24217538 - 24217458
Alignment:
Q  123 tggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttatta 203  Q
    ||||||||||| || | ||||||||| || |||  |||  |||||||||| || ||| ||||||||| |||||||||||||    
T  24217538 tggttgtcactaagatccaactctaacaacgaaggcaaggaataacaccattgcggaattgttccatttaacatgttatta 24217458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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