View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0806_low_2 (Length: 636)

Name: NF0806_low_2
Description: NF0806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0806_low_2
NF0806_low_2
[»] chr5 (23 HSPs)
chr5 (187-636)||(37412501-37412950)
chr5 (114-433)||(37533789-37534108)
chr5 (114-433)||(37640561-37640880)
chr5 (114-433)||(37712313-37712632)
chr5 (114-433)||(37436396-37436715)
chr5 (114-433)||(37697476-37697795)
chr5 (114-433)||(37824584-37824903)
chr5 (114-433)||(37399964-37400283)
chr5 (114-433)||(37703357-37703676)
chr5 (105-297)||(37595149-37595341)
chr5 (143-247)||(37429616-37429720)
chr5 (114-301)||(37381487-37381674)
chr5 (114-425)||(37392113-37392421)
chr5 (100-152)||(37412452-37412504)
chr5 (513-631)||(37824386-37824504)
chr5 (513-631)||(37400363-37400481)
chr5 (549-631)||(37429223-37429305)
chr5 (513-631)||(37697278-37697396)
chr5 (532-631)||(37436198-37436297)
chr5 (343-433)||(37595013-37595103)
chr5 (532-631)||(37533591-37533690)
chr5 (532-631)||(37712115-37712214)
chr5 (539-631)||(37640363-37640455)
[»] chr4 (2 HSPs)
chr4 (105-433)||(16842019-16842347)
chr4 (114-297)||(24216892-24217075)
[»] chr3 (1 HSPs)
chr3 (114-392)||(14553768-14554046)


Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 187 - 636
Target Start/End: Original strand, 37412501 - 37412950
Alignment:
Q  187 accttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccatagg 286  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412501 accttattgtaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccatagg 37412600  T
Q  287 tcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcactcaactaacacatttggac 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412601 tcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcactcaactaacacatttggac 37412700  T
Q  387 ctttcatttaacaaacttaccggtgaaatctcatcattactttcaaatctcgcacatctcacttacttgcatcttgaacaaaatagctttaccggtttga 486  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  37412701 ctttcatttaacaaacttaacggtgaaatcccatcattactttcaaatctcgcacatctcacttacttggatcttgaacaaaatgcctttaccggtttga 37412800  T
Q  487 tcttgaatatgttccataagcttattaaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctca 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412801 tcttgaatatgttccataagcttattaaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctca 37412900  T
Q  587 actttcttatttagatttatcatttaataaattagttggcccaatatcca 636  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412901 actttcttatttagatttatcatttaataaattagttggcccaatatcca 37412950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 114 - 433
Target Start/End: Complemental strand, 37534108 - 37533789
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    ||||||||||||||  |||||||| | | |||||||||||||||||||  | | |||||||||||||||||  |||||| |||  ||||||||| || ||    
T  37534108 ttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaatgataaccttagtggtcaacttccaaagtcca 37534009  T
Q  214 actggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccataggtcagttgaagtctctcaaccagttatc 313  Q
    |||||||||||||||||||||||||||  ||||||||  ||  ||| ||||||||||||||||||||||||||||| ||||||||||| |  || |||      
T  37534008 actggagcactcctctaaggtacttggtcctctctttctctgctttttcaggtgaaattccttattccataggtcaattgaagtctcttactcaattagt 37533909  T
Q  314 gcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaccggtgaa 413  Q
     |||  |   ||  ||||  ||||| || |||||| |||||| ||||||||||| ||||||||| ||||||| ||||||  ||| ||||||| ||||||     
T  37533908 cctttcattctgcaattttgatggaatggttcctctatctttgtggaacctcacccaactaacatatttggatctttcacataataaacttaacggtgag 37533809  T
Q  414 atctcatcattactttcaaa 433  Q
    |||||| |||||||||||||    
T  37533808 atctcaccattactttcaaa 37533789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 114 - 433
Target Start/End: Complemental strand, 37640880 - 37640561
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    ||||||||||||||  |||||||| | | |||||||||||||||||||  | | |||||||||| |||| |  |||||| |||  ||||||||| || ||    
T  37640880 ttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtcca 37640781  T
Q  214 actggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccataggtcagttgaagtctctcaaccagttatc 313  Q
    |||||||||||||||||||||||||| | |||  |||| ||  ||||||||||||||||||||||||||||||||| ||||||||||| |  || |||      
T  37640780 actggagcactcctctaaggtacttgaacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattgaagtctcttactcaattagt 37640681  T
Q  314 gcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaccggtgaa 413  Q
     |||  ||  ||  ||||  ||||  || |||||| |||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||  |||||     
T  37640680 cctttcagattgcaatttagatgggatggttcctctatctttgtggaacctcacccaactaacatatttggacctttcatttaataaacttaatggtgag 37640581  T
Q  414 atctcatcattactttcaaa 433  Q
    |||||| |||||||||||||    
T  37640580 atctcaccattactttcaaa 37640561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 114 - 433
Target Start/End: Complemental strand, 37712632 - 37712313
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    |||||||||||| || |||||||| | | |||||||||||||||||||  | | |||||||||| |||| |  |||||| |||  ||||||||| || ||    
T  37712632 ttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtcca 37712533  T
Q  214 actggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccataggtcagttgaagtctctcaaccagttatc 313  Q
    |||||||||||||||||||||||||||  |||||||   ||  ||| ||||||||||||||||||||||||||||| ||||||||||| |  || |||      
T  37712532 actggagcactcctctaaggtacttggtcctctcttcctctgctttttcaggtgaaattccttattccataggtcaattgaagtctcttactcaattagt 37712433  T
Q  314 gcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaccggtgaa 413  Q
     |||  |   ||  ||||  ||||  || |||||| |||||| ||||| ||||| |||||||||||||||||||||||||| || ||||||| ||||||     
T  37712432 cctttcacattgcaattttgatgggatggttcctctatctttgtggaatctcacccaactaacacatttggacctttcattgaataaacttaacggtgag 37712333  T
Q  414 atctcatcattactttcaaa 433  Q
    |||||| |||||||||||||    
T  37712332 atctcaccattactttcaaa 37712313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 114 - 433
Target Start/End: Complemental strand, 37436715 - 37436396
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    ||||||||||||||  |||||||| | | |||||||||||||||||||  | | |||||||||| |||| |  |||||| |||  ||||||||| || ||    
T  37436715 ttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtcca 37436616  T
Q  214 actggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccataggtcagttgaagtctctcaaccagttatc 313  Q
    |||||||||||||||||||||||||| | |||  |||| ||  ||||||||||||||||||||||||||||||||| ||||||||||| |  || |||      
T  37436615 actggagcactcctctaaggtacttgaacctccgtttatctgctttctcaggtgaaattccttattccataggtcaattgaagtctcttactcaattaga 37436516  T
Q  314 gcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaccggtgaa 413  Q
     |||  ||  ||  ||||  ||||  || |||||| |||||| ||||||||||||||||||||| ||||||||||||||   || ||||||| | ||||     
T  37436515 ccttttaggttgcaattttgatgggatggttcctctatctttgtggaacctcactcaactaacatatttggacctttcaagaaataaacttaacagtgag 37436416  T
Q  414 atctcatcattactttcaaa 433  Q
    || ||| |||||||||||||    
T  37436415 atttcaccattactttcaaa 37436396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 114 - 433
Target Start/End: Complemental strand, 37697795 - 37697476
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    |||||||||||| || |||||||| | | |||||||||||||||||||  | | |||||||||| |||| |  |||||| |||  ||||||||| || ||    
T  37697795 ttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtcca 37697696  T
Q  214 actggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccataggtcagttgaagtctctcaaccagttatc 313  Q
    ||||||||||||||||||||||||| || |||||||  |||  ||||||||||||||||||||||||||||||||| ||||||| ||| |  |  |||      
T  37697695 actggagcactcctctaaggtacttagacctctcttacactgctttctcaggtgaaattccttattccataggtcaattgaagtatcttactcgattaga 37697596  T
Q  314 gcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaccggtgaa 413  Q
      ||  |   ||  ||||  ||||  || |||||| |||||| ||||||||||||||||||||| ||||||| ||||||  ||| ||||||| ||||||     
T  37697595 tttttcatggtgcaattttgatgggatggttcctctatctttgtggaacctcactcaactaacatatttggatctttcaaataataaacttaacggtgag 37697496  T
Q  414 atctcatcattactttcaaa 433  Q
    |||||| |||||||||||||    
T  37697495 atctcaccattactttcaaa 37697476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 114 - 433
Target Start/End: Complemental strand, 37824903 - 37824584
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    |||||||||||| || |||||||| | | |||||||||||||||||||  | | |||||||||| |||| |  |||||| |||  ||||||||| || ||    
T  37824903 ttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcataaccttagtggtcaacttccaaagtcca 37824804  T
Q  214 actggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccataggtcagttgaagtctctcaaccagttatc 313  Q
    |||||||||||||||||||||||||||| |||||||   ||  ||| ||||||||||||||||||||||||||||| ||||||||||| |  || |||      
T  37824803 actggagcactcctctaaggtacttggacctctcttcctctgctttttcaggtgaaattccttattccataggtcaattgaagtctcttactcaattaga 37824704  T
Q  314 gcttaaagcatgtgatttgcat-ggattgattcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaccggtga 412  Q
     |||  |   ||  ||||  || |||||| |||||| |||||| ||||||||||| ||||||||| ||||||||||||||   || || |||| ||||||    
T  37824703 cctttcatattgcaattttgatgggattg-ttcctctatctttgtggaacctcacccaactaacatatttggacctttcacaaaataagcttaacggtga 37824605  T
Q  413 aatctcatcattactttcaaa 433  Q
     |||||| |||||||||||||    
T  37824604 gatctcaccattactttcaaa 37824584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 114 - 433
Target Start/End: Original strand, 37399964 - 37400283
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    ||||||||||||||  |||||||| | | |||||||||||||||||||  | | |||||||||| |||| |  |||||| |||  ||||||||| || ||    
T  37399964 ttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtcca 37400063  T
Q  214 actggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccataggtcagttgaagtctctcaaccagttatc 313  Q
    |||||||||||||||||||||||||||  |||||||   ||  ||| |||||||||||||| ||||||||||| || ||||||| ||| |  |  |||      
T  37400064 actggagcactcctctaaggtacttggtcctctcttcctctgctttttcaggtgaaattccctattccataggccaattgaagtatcttactcgattaga 37400163  T
Q  314 gcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaccggtgaa 413  Q
      ||  |   ||  ||||  ||||  || |||||| |||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||| ||||||     
T  37400164 tttttcacggtgcaatttagatgggatggttcctctatctttgtggaacctcacccaactaacatatttggacctttcatttaataaacttaacggtgag 37400263  T
Q  414 atctcatcattactttcaaa 433  Q
    |||||| |||||||||||||    
T  37400264 atctcaccattactttcaaa 37400283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 114 - 433
Target Start/End: Complemental strand, 37703676 - 37703357
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    ||||||||||||||  |||||||| | | |||||||||||||||||||  | | ||||||||||  ||| |  |||||| |||  |||||||||  | ||    
T  37703676 ttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcattcaattataaccttagtggtcaacttccaaaatcca 37703577  T
Q  214 actggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccataggtcagttgaagtctctcaaccagttatc 313  Q
    |||||||| |||||||||| |||||| | |||||||   ||  ||| ||||||||||||||||||||||||||||| ||||||||||| |  || |||      
T  37703576 actggagctctcctctaagatacttgaacctctcttcctctgctttttcaggtgaaattccttattccataggtcaattgaagtctcttactcaattaga 37703477  T
Q  314 gcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaccggtgaa 413  Q
     |||  |   ||  ||||  ||||  || |||||| |||||| ||||| ||||| ||||||||| ||||||||||||||||||| ||||||| ||||||     
T  37703476 cctttcacattgcaatttagatgggatggttcctctatctttgtggaatctcacccaactaacatatttggacctttcatttaataaacttaacggtgag 37703377  T
Q  414 atctcatcattactttcaaa 433  Q
    |||||| |||||||||||||    
T  37703376 atctcaccattactttcaaa 37703357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 105 - 297
Target Start/End: Complemental strand, 37595341 - 37595149
Alignment:
Q  105 aacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttc 204  Q
    |||||| | ||||||||||||||  |||||||| | | |||||||||||||||||||  | | |||||||||| ||||||  |||||| |||  ||||||    
T  37595341 aacactgggttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaacttc 37595242  T
Q  205 caatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccataggtcagttgaagt 297  Q
    ||| || ||||| |||||||||||||||||||||| | |||  |||| ||  ||| ||||||||||||||||||||||||||||| |||||||    
T  37595241 caaagtccaacttgagcactcctctaaggtacttgaacctccgtttatctgctttttcaggtgaaattccttattccataggtcaattgaagt 37595149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 37429720 - 37429616
Alignment:
Q  143 ctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggat 242  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||||||| ||| ||||||||| ||| ||||||||||||||| ||||||||||||||     
T  37429720 ctctttaccaaatcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggac 37429621  T
Q  243 ctctc 247  Q
    |||||    
T  37429620 ctctc 37429616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 114 - 301
Target Start/End: Original strand, 37381487 - 37381674
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    ||||||||||||||  |||||||| | | ||||||||||||||| |||  ||||||||| ||||||||| |  | || |   |  ||||||| |  | ||    
T  37381487 ttgcaaggaaatttgtcaagtgacatcctctctttacctaatctccaaacactagatttatcatctaataaatatctgagcagtcaacttccgaaatcca 37381586  T
Q  214 actggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccataggtcagttgaagtctct 301  Q
    |||||||||||||| | ||||||||||| ||||||   ||   |||||||||||||||||||||||||||||| ||||||||||||||    
T  37381587 actggagcactcctttgaggtacttggacctctctcgcacccctttctcaggtgaaattccttattccataggccagttgaagtctct 37381674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 114 - 425
Target Start/End: Original strand, 37392113 - 37392421
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    ||||||||||||||  |||||| | | | |||||||||||||||||||  |||||||||||||  ||||||    ||||  || ||||||||||  |  |    
T  37392113 ttgcaaggaaatttgtcaagtgccatcctctctttacctaatcttcaaagactagatttgtcaaataatgaa---cttagcggtaaacttccaaaatcaa 37392209  T
Q  214 actggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccataggtcagttgaagtctctcaaccagttatc 313  Q
    |||||||||||||||||||||||||||| || |||   |    ||||||||||||||||||  | || ||||| || ||||||| ||| |  || |||      
T  37392210 actggagcactcctctaaggtacttggacctatctggcatcactttctcaggtgaaattcccaaatctataggccatttgaagtatcttactcaattagt 37392309  T
Q  314 gcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaccggtgaa 413  Q
     |||  |   ||  ||||  ||||  || |||||| |||||| ||||||||||||||||||||||||||||||||||||   || ||||||| ||||||     
T  37392310 cctttcatattgcaatttagatgggatggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataaacttaacggtgag 37392409  T
Q  414 atctcatcatta 425  Q
    |||||| |||||    
T  37392410 atctcaccatta 37392421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 37412452 - 37412504
Alignment:
Q  100 tagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacct 152  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37412452 tagggaacactagtttgcaaggaaatttagcaagtgacattccctctttacct 37412504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 513 - 631
Target Start/End: Complemental strand, 37824504 - 37824386
Alignment:
Q  513 aaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcattta 612  Q
    ||||| ||||||||||   |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||||||||| ||||||||| ||    
T  37824504 aaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttcttatttatatttatcatcta 37824405  T
Q  613 ataaattagttggcccaat 631  Q
    | ||| |||||||||||||    
T  37824404 acaaactagttggcccaat 37824386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 513 - 631
Target Start/End: Original strand, 37400363 - 37400481
Alignment:
Q  513 aaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcattta 612  Q
    ||||| ||||||||||   |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||| ||||| ||||||||| ||    
T  37400363 aaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttatcatcta 37400462  T
Q  613 ataaattagttggcccaat 631  Q
    | ||| |||||||||||||    
T  37400463 acaaactagttggcccaat 37400481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 549 - 631
Target Start/End: Complemental strand, 37429305 - 37429223
Alignment:
Q  549 acaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 631  Q
    ||||| ||| |||| ||||||||||| |||||| |||| ||||||   ||||||||||| ||||||||||||| |||||||||    
T  37429305 acaggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaat 37429223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 513 - 631
Target Start/End: Complemental strand, 37697396 - 37697278
Alignment:
Q  513 aaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcattta 612  Q
    ||||| ||||||||||   |||||||||||||| | ||||| ||| |||| |||||| | || |||||| | || |||||| |||||| |||||||||||    
T  37697396 aaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttaggtttatcattta 37697297  T
Q  613 ataaattagttggcccaat 631  Q
    | ||| ||||||| |||||    
T  37697296 acaaactagttgggccaat 37697278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 532 - 631
Target Start/End: Complemental strand, 37436297 - 37436198
Alignment:
Q  532 tttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 631  Q
    ||||||| |||| | | ||||| ||| |||| |||||| | || |||||| | || |||||| ||||||||||||||||||| ||| |||||||||||||    
T  37436297 tttcctccaacagcctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttagatttatcatttaacaaactagttggcccaat 37436198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 433
Target Start/End: Complemental strand, 37595103 - 37595013
Alignment:
Q  343 ttcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 433  Q
    |||||| |||||| ||||||||||| ||||||||| |||||   ||||||| ||| || |||  |||||| |||||| |||||||||||||    
T  37595103 ttcctctatctttgtggaacctcacccaactaacatatttgagtctttcatataataagcttgacggtgagatctcaccattactttcaaa 37595013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 631
Target Start/End: Complemental strand, 37533690 - 37533591
Alignment:
Q  532 tttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 631  Q
    |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| ||||||  ||||| |||||||| ||| ||| ||||||| |||||    
T  37533690 tttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcacctttctattttaggtttatcatataacaaactagttgggccaat 37533591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 631
Target Start/End: Complemental strand, 37712214 - 37712115
Alignment:
Q  532 tttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 631  Q
    |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||| ||||| ||||| ||  ||| ||| |||||||||||||    
T  37712214 tttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttagcagataacaaactagttggcccaat 37712115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 539 - 631
Target Start/End: Complemental strand, 37640455 - 37640363
Alignment:
Q  539 taacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 631  Q
    ||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||| ||||| ||||| ||| ||| ||| |||||||||||||    
T  37640455 taacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttagcatataacaaactagttggcccaat 37640363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 105 - 433
Target Start/End: Original strand, 16842019 - 16842347
Alignment:
Q  105 aacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttc 204  Q
    |||||| ||||||||||||||||   ||||||| | | ||||||  | |||||||||  |||||||||||||  |||| | ||||||| |||  ||||||    
T  16842019 aacactggtttgcaaggaaatttgttaagtgacatactctctttgtcaaatcttcaaagactagatttgtcacataatcaagaccttagtggtcaacttc 16842118  T
Q  205 caatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccataggtcagttgaagtctctcaa 304  Q
    |||  | |||||||||||||||||||||||||||| | ||||||   |||  ||||||||| |||||  | |||||||||||||| || |||||||| |     
T  16842119 caaaatccaactggagcactcctctaaggtacttgtacctctctcatactgctttctcaggagaaatctcctattccataggtcaattaaagtctcttac 16842218  T
Q  305 ccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaactt 404  Q
     || |||   |||  |   ||  ||||  ||||  || |||||| |||||| ||||||||||||||||||||| ||||||| ||||||  ||| ||||||    
T  16842219 tcatttagtcctttcattttgcaattttgatgggatggttcctctatctttgtggaacctcactcaactaacatatttggatctttcaaataataaactt 16842318  T
Q  405 accggtgaaatctcatcattactttcaaa 433  Q
    | |||||| |||||| |||||||||||||    
T  16842319 aacggtgagatctcaccattactttcaaa 16842347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 114 - 297
Target Start/End: Original strand, 24216892 - 24217075
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    |||||||||||| |  |||||||| | | ||||||||| ||||||||| |||||||||||||||| ||| | ||||||  ||| ||| |||||| || ||    
T  24216892 ttgcaaggaaatatgtcaagtgacatcctctctttaccaaatcttcaaaaactagatttgtcatcgaatcaagaccttcgtggtaaatttccaacgtcca 24216991  T
Q  214 actggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccataggtcagttgaagt 297  Q
    ||||||||||||| |||||||||||||| ||||||||  ||  |||||||||||||||| | || || || |||||||||||||    
T  24216992 actggagcactcccctaaggtacttggacctctctttctctggtttctcaggtgaaatttcatactctattggtcagttgaagt 24217075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 114 - 392
Target Start/End: Complemental strand, 14554046 - 14553768
Alignment:
Q  114 ttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttca 213  Q
    ||||||||||||||  |||||||| | | |||||| || ||||||||| |||||||||||  |  |||||| |  |||| |||  |||||||||  | ||    
T  14554046 ttgcaaggaaatttgtcaagtgacatactctctttgccaaatcttcaaaaactagatttggtaggtaatgatggtcttagtggtcaacttccaaaatcca 14553947  T
Q  214 actggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccataggtcagttgaagtctctcaaccagttatc 313  Q
    ||||||| |||||||||||||||||| | |||  ||   ||  ||||||||||||||||||||||||||||||||| ||||||||||| |  || |||      
T  14553946 actggagtactcctctaaggtacttgtacctccattactctgctttctcaggtgaaattccttattccataggtcaattgaagtctcttactcatttagt 14553847  T
Q  314 gcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcactcaactaacacatttggacctttca 392  Q
     |||  ||  ||  ||||  ||||  || |||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  14553846 cctttcagattgcaatttagatgggatggttcctctatctttgtggaacctcactcaactaacacatttggacctttca 14553768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 4954 times since January 2019
Visitors: 5753