View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0806_low_6 (Length: 396)
Name: NF0806_low_6
Description: NF0806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0806_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 14965778 - 14965438
Alignment:
| Q |
18 |
tagacaaacaatttactacatcatattattttctaatatgccatatattgtatctatgaaattacaaaacaaagctttaaccattaagttgacatctctt |
117 |
Q |
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| T |
14965778 |
tagacaaacaatttactacatcatattatgttctaatatgccatatattgtatctatgaaattacaaaacaaagctctaaacattaagttgacatctctt |
14965679 |
T |
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| Q |
118 |
agatacaaataaagacaattaaaggtaactaccatttttactaaaatgcaacattccnnnnnnnnnnnnnnnnacgatactaacttactatctaaaattg |
217 |
Q |
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| T |
14965678 |
agacacaaataaagacaattaaaggtaactaccatttttactaaaatgcaacattccttttcttttttattttacgatactaacttactatctaaaattg |
14965579 |
T |
|
| Q |
218 |
tcgagttggagactttacacatatgtggtttcaaattaccctaaaaacacatggatataatttatctatacaagtacgcaatatnnnnnnncaaaagaaa |
317 |
Q |
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| T |
14965578 |
tcgagttggagactttacacaaatgtggtttcaaattaccctaaaaacacatggatataatttatctatacaagtacgcaatataaaaaaacaaaagaaa |
14965479 |
T |
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| Q |
318 |
tgttaaaagcatgcaaagcatgctataataagcatttgtaacaaataaag |
367 |
Q |
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| T |
14965478 |
tgtta---------aaagcatgctataataagcatttgtaacaaataaag |
14965438 |
T |
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