View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0806_low_8 (Length: 353)
Name: NF0806_low_8
Description: NF0806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0806_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 1064181 - 1064460
Alignment:
| Q |
13 |
aaaatattggtgtctttctaaatagatttggattgcatgcagtcatgcagataagagtggtttgttcgacaattatgatcggacaatcgagatttaaaac |
112 |
Q |
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| T |
1064181 |
aaaatattggtgtctttctaaatagatttggattgcatgcagtcatgcagataagaatggtttgttcgacaattatgatcggacaatcgagatttaaagc |
1064280 |
T |
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| Q |
113 |
aatttaaatattaagaataaaccaattttaaatttggacagtttaatttaaatcggacggtcaaatctcttctgcatgatgttttgactatatgcaattc |
212 |
Q |
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| T |
1064281 |
agtttaaatattaagaataaaccaattttaaatttggacagtttaatttaaatcggacggtcaaatctcttctgcatgatgttttgattatatgcaattc |
1064380 |
T |
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| Q |
213 |
agatatacattattttttagcacaataacttcaatattcaaccaattatgcaacgatattattcaaacacataaattaag |
292 |
Q |
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| T |
1064381 |
agatatatattattttttaacacaataacttcaatattgaaccaattatgcaacgatattaatcaaacacataaattaag |
1064460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 292
Target Start/End: Original strand, 1088023 - 1088194
Alignment:
| Q |
115 |
tttaaatattaagaataaaccaattttaaatttggacagtttaatttaaatcggacggtcaaatctcttctgcatgatgttttgactatat--gcaattc |
212 |
Q |
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| T |
1088023 |
tttaaataataagaataaagctactttaaatttggacagtctccattagatcagatggtcaaatctctcctgcatgaagttttaactatatgcgcaattc |
1088122 |
T |
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| Q |
213 |
agatatacattattttttagcacaataacttcaatattcaaccaattatgcaacgatattattcaaacacataaattaag |
292 |
Q |
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| T |
1088123 |
agat--------tattttaacgcagtaactttaatattcaaccatttatgtaacaatattaatcaaacacataaattaag |
1088194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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