View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0806_low_9 (Length: 344)
Name: NF0806_low_9
Description: NF0806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0806_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 392380 - 392680
Alignment:
| Q |
16 |
atataggttacatatataaataaatataaatgtatgcaacttcagttaaacaaaatgaggctgtaggcccgcttctgaaacttctggtttgagccgctaa |
115 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
392380 |
atataggttacatatataaataaatataaacgtatgcaacttcagttaaacaaaatgaggctgtaggcccgcttttgaaacttctggtttgagctgctaa |
392479 |
T |
|
| Q |
116 |
cgagcatcgataagctgtcgcaagcaatcaaagcgattcccttccttattctaatagaaaaggtaatccgggccctctccttgtctacagctatgctatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
392480 |
cgagcatcgataagctgtcgcaagcaatcaaagcgattcccttccttattctaatagaaaaggtaatccgggccctctccttgtctacagctatgctatc |
392579 |
T |
|
| Q |
216 |
tctatcactgagattatttgatgtttcatgacttaatttaaccacaataaacacattgactaaattggaagtaacatttgtaattctcaataacataatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
392580 |
tctatcactgagattatttgatgtttcatgacttaatttaaccacaataaacacattgactaaattggaagtaacatttgtaattctcaataacataatt |
392679 |
T |
|
| Q |
316 |
g |
316 |
Q |
| |
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| |
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| T |
392680 |
g |
392680 |
T |
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