View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0807_high_2 (Length: 444)

Name: NF0807_high_2
Description: NF0807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0807_high_2
NF0807_high_2
[»] chr2 (6 HSPs)
chr2 (79-336)||(1233529-1233770)
chr2 (30-74)||(1233452-1233496)
chr2 (382-436)||(1233816-1233870)
chr2 (279-335)||(35029861-35029917)
chr2 (279-335)||(34229074-34229130)
chr2 (279-335)||(34228160-34228216)
[»] chr3 (5 HSPs)
chr3 (279-336)||(40809592-40809649)
chr3 (279-336)||(40810284-40810341)
chr3 (279-335)||(35903702-35903758)
chr3 (279-336)||(8922897-8922954)
chr3 (279-336)||(41325835-41325892)
[»] chr4 (3 HSPs)
chr4 (280-335)||(44516799-44516854)
chr4 (279-335)||(32159521-32159577)
chr4 (279-335)||(39311371-39311427)
[»] chr8 (5 HSPs)
chr8 (279-328)||(8814483-8814532)
chr8 (273-330)||(17943018-17943075)
chr8 (279-336)||(42578722-42578779)
chr8 (283-335)||(11519367-11519419)
chr8 (279-335)||(38444464-38444520)
[»] chr6 (2 HSPs)
chr6 (290-330)||(34260140-34260180)
chr6 (290-330)||(34262190-34262230)
[»] scaffold0402 (1 HSPs)
scaffold0402 (294-330)||(10884-10920)
[»] chr1 (1 HSPs)
chr1 (279-335)||(7338798-7338854)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 6e-81; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 79 - 336
Target Start/End: Original strand, 1233529 - 1233770
Alignment:
Q  79 aagcatgatggtcttggtactgttgatgggtttggcaacccatggaattaagataagggaaactaactctacctaaaggtggaaaataagagttcaattt 178  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||  |||               ||||||||||| |||||||||||||||||||||    
T  1233529 aagcatgatggtcttggtactgttgatgggtttggca-cccatggaaccaag---------------tctacctaaagatggaaaataagagttcaattt 1233612  T
Q  179 gatatagttggtgaatacctttagtatttcaattacnnnnnnnnnggtacaatttacctatcacattttaatcccccctccaatttaccggtctattttt 278  Q
    ||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1233613 gatatagttggtgaatacctttagtatttcaattactttttttttggtacaatttacctatcacattttaatcccccctccaatttaccagtctattttt 1233712  T
Q  279 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 336  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1233713 ctccatttaggtttcctcaatttaccccatttgaagtcatggatgtgtgacacgtggc 1233770  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 1233452 - 1233496
Alignment:
Q  30 cattataggctttttactctctcttccaaaattagcaacttattc 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1233452 cattataggctttttactctctcttccaaaattagcaacttattc 1233496  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 382 - 436
Target Start/End: Original strand, 1233816 - 1233870
Alignment:
Q  382 ctagttcttctcttgtatctgaaacaacacaccagtctcctttcttcttcatctc 436  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||    
T  1233816 ctagttcttctcttgtatccgaagcaacacaccagtctcctttcttcttcttctc 1233870  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 35029917 - 35029861
Alignment:
Q  279 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 335  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  35029917 ctccatttaggtttcctcaatttaccccatttcaagtcatagatgtgtgacatgtgg 35029861  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 34229130 - 34229074
Alignment:
Q  279 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 335  Q
    ||||||||| | |||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  34229130 ctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtgg 34229074  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 34228160 - 34228216
Alignment:
Q  279 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 335  Q
    ||||||||| | |||||||||||||| ||||| |||| || ||||||||||| ||||    
T  34228160 ctccatttaagattcctcaatttaccccatttcaagttatagatgtgtgacatgtgg 34228216  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 40809592 - 40809649
Alignment:
Q  279 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 336  Q
    |||||||| |||||||||||||||   ||||| |||||||||||||||||||||||||    
T  40809592 ctccatttgggtttcctcaatttattccattttaagtcatggatgtgtgacacgtggc 40809649  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 40810341 - 40810284
Alignment:
Q  279 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 336  Q
    ||||||||| |||||||||||||| | ||||| |||||||||||||||||||| ||||    
T  40810341 ctccatttaagtttcctcaatttatcccattttaagtcatggatgtgtgacacatggc 40810284  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 35903702 - 35903758
Alignment:
Q  279 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 335  Q
    |||||||||||||  ||||||||||| ||||| |||| |||||||||||||| ||||    
T  35903702 ctccatttaggttctctcaatttaccccatttcaagttatggatgtgtgacatgtgg 35903758  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 8922897 - 8922954
Alignment:
Q  279 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 336  Q
    |||||||||||||| ||||||||||| |||||    |||||||||||||||| |||||    
T  8922897 ctccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgacatgtggc 8922954  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 41325835 - 41325892
Alignment:
Q  279 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 336  Q
    |||||||||||||| ||||||||||| |||||    |||||||||||||||| |||||    
T  41325835 ctccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgacatgtggc 41325892  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 44516799 - 44516854
Alignment:
Q  280 tccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 335  Q
    |||||||||||||||| |||||||||||||| |||| || ||||||||||| ||||    
T  44516799 tccatttaggtttccttaatttacctcattttaagtgatagatgtgtgacatgtgg 44516854  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 32159577 - 32159521
Alignment:
Q  279 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 335  Q
    |||||||||||||||||||||||||| ||||| |   | ||||||||||||| ||||    
T  32159577 ctccatttaggtttcctcaatttaccccatttcattccttggatgtgtgacatgtgg 32159521  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 39311427 - 39311371
Alignment:
Q  279 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 335  Q
    ||||||||| | || ||||||||||| ||||| ||||||| ||||||||||| ||||    
T  39311427 ctccatttaagatttctcaatttaccccattttaagtcatagatgtgtgacatgtgg 39311371  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 8814532 - 8814483
Alignment:
Q  279 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtga 328  Q
    |||||||| ||||||||||||||||| ||||  |||||||||||||||||    
T  8814532 ctccattttggtttcctcaatttaccccattacaagtcatggatgtgtga 8814483  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 17943075 - 17943018
Alignment:
Q  273 atttttctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgaca 330  Q
    ||||| ||||||||   ||| ||||||||||| ||||||||| |||||||||||||||    
T  17943075 attttgctccatttcactttgctcaatttaccccatttgaagacatggatgtgtgaca 17943018  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 42578722 - 42578779
Alignment:
Q  279 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 336  Q
    ||||||||| |||| ||||||||||| ||||| ||||||| ||||| ||||| |||||    
T  42578722 ctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggc 42578779  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 11519367 - 11519419
Alignment:
Q  283 atttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 335  Q
    ||||||||||| |||||||||| ||||| || |||| ||||||||||| ||||    
T  11519367 atttaggtttcttcaatttaccccatttcaaatcatagatgtgtgacatgtgg 11519419  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 38444520 - 38444464
Alignment:
Q  279 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 335  Q
    |||||||||| |||||||||||||||  |||| |||| || ||||||||||| ||||    
T  38444520 ctccatttagatttcctcaatttacccaatttcaagttatagatgtgtgacatgtgg 38444464  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 34260140 - 34260180
Alignment:
Q  290 tttcctcaatttacctcatttgaagtcatggatgtgtgaca 330  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  34260140 tttcctcaatttaccccatttcaagtcatggatgtgtgaca 34260180  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 34262230 - 34262190
Alignment:
Q  290 tttcctcaatttacctcatttgaagtcatggatgtgtgaca 330  Q
    ||||||||||||||| ||||| |||| ||||||||||||||    
T  34262230 tttcctcaatttaccccattttaagttatggatgtgtgaca 34262190  T

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Target: scaffold0402 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 10884 - 10920
Alignment:
Q  294 ctcaatttacctcatttgaagtcatggatgtgtgaca 330  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  10884 ctcaatttaccccatttgaagacatggatgtgtgaca 10920  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 7338854 - 7338798
Alignment:
Q  279 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 335  Q
    ||||||||| |||||||||||||||  ||||| ||||||| ||||||| ||| ||||    
T  7338854 ctccatttatgtttcctcaatttactccatttcaagtcatagatgtgtaacatgtgg 7338798  T

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