View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0807_high_6 (Length: 278)
Name: NF0807_high_6
Description: NF0807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0807_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 93 - 278
Target Start/End: Complemental strand, 54980237 - 54980051
Alignment:
| Q |
93 |
caaagttcaaaccttgttaactaacataatcactaatttactaacatttgctgataaaaacaaattttagaactataagaagtttaagtctgcagttcaa |
192 |
Q |
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| T |
54980237 |
caaagttcaaaccttgttaactaacataatcactaatttactaacatttgctgataaaaacaaattttagaattataagaagtttaagtctgcagttcaa |
54980138 |
T |
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| Q |
193 |
tccctgata---actaacataaccaccaataactaatatacaaatttacatactgatgatgtccatctcatttggcattcaaaacatgt |
278 |
Q |
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| T |
54980137 |
tccctgataactactaacataaccaccaataactaatatacaaatttacatactgatga--gcctcctcatttggcattcaaaacatgt |
54980051 |
T |
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