View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0807_low_1 (Length: 578)
Name: NF0807_low_1
Description: NF0807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0807_low_1 |
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| [»] scaffold0854 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 6915962 - 6915657
Alignment:
| Q |
1 |
gattggaatgtcacaactcctaatattggtactacacgtgacaattgacaaactttctctggagttgctatttatgtgctttggaaagatagaaatagtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915962 |
gattggaatgtcacaactcctaatattggtactacacgtgacaattgacaaactttctctggagttgctatttatgtgctttggaaagatagaaatagtt |
6915863 |
T |
|
| Q |
101 |
tggtgttcaataggaagtctatgattgacaatcaacttctcttaatttcaaaccaagctagtttcgttatctcctcttccaattgtagtgtggattctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915862 |
tggtgttcaataggaagtctatgattgacaatcaacttctcttaatttcaaaccaagctagtttcgttatctcctcttccaattgtagtgtggattctca |
6915763 |
T |
|
| Q |
201 |
atctcattccataggatgtagcattgagatatcttggacacctccaccgcatgatttttacaagattattaatattgatggatctcataaaaagtctttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915762 |
atctcattccataggatgtagcattgagatatcttggacacctccaccgcatgattattacaagattattaatattgatggatctcataaaaagtctttt |
6915663 |
T |
|
| Q |
301 |
aaggat |
306 |
Q |
| |
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|||||| |
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| T |
6915662 |
aaggat |
6915657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 307 - 407
Target Start/End: Complemental strand, 4154777 - 4154677
Alignment:
| Q |
307 |
gaggaatgatatctagacacaaaacttcagacacaatatcaacaacataggcagttttgtcatttcaaccttaagtcaagggtagttttgtaaaaccact |
406 |
Q |
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| T |
4154777 |
gaggaatgataactagacacaaaattttagacacaataccaacaccataggcaattttgttatttcaaccttaagttaagggcagctttgtaaaaccact |
4154678 |
T |
|
| Q |
407 |
a |
407 |
Q |
| |
|
| |
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|
| T |
4154677 |
a |
4154677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 41642871 - 41642963
Alignment:
| Q |
308 |
aggaatgatatctagacacaaaacttcagacacaatatcaacaacataggcagttttgtcatttcaaccttaagtcaagggtagttttgtaaa |
400 |
Q |
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|||||||||| |||||||||||| || |||||||||||||||| ||| | || |||||| |||||||||| || |||| || ||||| ||||| |
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| T |
41642871 |
aggaatgataactagacacaaaattttagacacaatatcaacatcatggacaattttgttatttcaacctcaaatcaatggcagtttggtaaa |
41642963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 307 - 407
Target Start/End: Original strand, 1016 - 1116
Alignment:
| Q |
307 |
gaggaatgatatctagacacaaaacttcagacacaatatcaacaacataggcagttttgtcatttcaaccttaagtcaagggtagttttgtaaaaccact |
406 |
Q |
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||||||||||| ||||||||||| || |||||||||||||||| ||| ||| |||||||||||||||||||||| ||||| || |||||||||||||| |
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| T |
1016 |
gaggaatgataattagacacaaaattttagacacaatatcaacaccatgggcttttttgtcatttcaaccttaagttaagggcagctttgtaaaaccact |
1115 |
T |
|
| Q |
407 |
a |
407 |
Q |
| |
|
| |
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|
| T |
1116 |
a |
1116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 72 - 298
Target Start/End: Complemental strand, 34868892 - 34868666
Alignment:
| Q |
72 |
ttatgtgctttggaaagatagaaatagtttggtgttcaataggaagtctatgattgacaatcaacttctct---taatttcaaaccaagctagtttcgtt |
168 |
Q |
| |
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||||| ||||| ||||||| ||||||||| || ||||||||||| | ||||||| |||||||||| | ||| ||||| ||||||||||| | |
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| T |
34868892 |
ttatgagctttcaaaagataaaaatagttttgtaatcaataggaagcatgtgattgatcatcaacttcttcgtctgattacaaacaaagctagtttcaat |
34868793 |
T |
|
| Q |
169 |
atctcctcttccaattgtagtgtggattctcaatctcattccataggatgtagcattgagatatcttggacacctccaccgcatgatttttacaagatta |
268 |
Q |
| |
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|| ||||||||| ||||||||||||||||||| ||||| || || |||||||||||||||| |||||||||||||||||||| | ||| || | |
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| T |
34868792 |
attctctcttccaaccgtagtgtggattctcaatcacattcaatgagacgtagcattgagatatcctggacacctccaccgcatgactattattag---a |
34868696 |
T |
|
| Q |
269 |
ttaatattgatggatctcataaaaagtctt |
298 |
Q |
| |
|
|||| |||||||||||| ||||||||||| |
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| T |
34868695 |
ttaacgttgatggatctcgtaaaaagtctt |
34868666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 305 - 407
Target Start/End: Complemental strand, 14699735 - 14699633
Alignment:
| Q |
305 |
atgaggaatgatatctagacacaaaacttcagacacaatatcaacaacataggcagttttgtcatttcaaccttaagtcaagggtagttttgtaaaacca |
404 |
Q |
| |
|
||||||||||||| |||||||||||| || |||||||||| ||||| ||| |||| |||||| |||||||||| || || |||| ||||| ||||||||| |
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| T |
14699735 |
atgaggaatgataactagacacaaaattttagacacaataccaacaccatgggcaattttgttatttcaacctcaaatcgagggcagtttggtaaaacca |
14699636 |
T |
|
| Q |
405 |
cta |
407 |
Q |
| |
|
||| |
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|
| T |
14699635 |
cta |
14699633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 307 - 404
Target Start/End: Original strand, 4229173 - 4229270
Alignment:
| Q |
307 |
gaggaatgatatctagacacaaaacttcagacacaatatcaacaacataggcagttttgtcatttcaaccttaagtcaagggtagttttgtaaaacca |
404 |
Q |
| |
|
||||||||||| ||||| |||||| || |||||||||| ||||| ||| ||| |||||||||||||||||||||| ||||| || |||||||||||| |
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| T |
4229173 |
gaggaatgataactagatacaaaattttagacacaataccaacaccatgggcttttttgtcatttcaaccttaagttaagggcagctttgtaaaacca |
4229270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 407
Target Start/End: Original strand, 8551572 - 8551668
Alignment:
| Q |
311 |
aatgatatctagacacaaaacttcagacacaatatcaacaacataggcagttttgtcatttcaaccttaagtcaagggtagttttgtaaaaccacta |
407 |
Q |
| |
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||||||| ||||||||||| || |||||||||| ||||| ||| |||| |||||| |||||||||| || ||||||| ||||| |||||||||||| |
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| T |
8551572 |
aatgataattagacacaaaattttagacacaataccaacaccatgggcaattttgttatttcaacctcaaatcaagggcagtttggtaaaaccacta |
8551668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 307 - 405
Target Start/End: Complemental strand, 53305359 - 53305266
Alignment:
| Q |
307 |
gaggaatgatatctagacacaaaacttcagacacaatatcaacaacataggcagttttgtcatttcaaccttaagtcaagggtagttttgtaaaaccac |
405 |
Q |
| |
|
||||||||||| |||||||||||| || | |||||||| ||||| | ||||||||||||||||||||||||| ||||| || ||||||||||||| |
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|
| T |
53305359 |
gaggaatgataactagacacaaaattttaaacacaataccaacatc-----cagttttgtcatttcaaccttaagttaagggcagctttgtaaaaccac |
53305266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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